Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00894 ATGGCAACTTCCGCCAATTCCTCCGGCGGTTCCTTGCCGTTGCTAAACAACCGAACCTCCGTCGCCGGTCTCAAACTCTACGTCTTAATCCTCATTTTCCTCTCAATCGTGATCGCAGTTACGATTTCTCTCCTCATTTTTCTCTGCATTCGCCGGAACCGAAACTCGAACAAGAGCGAAATGCGAGTGAAAGTGAAGCATAGCTCCGGCACAATTCCGCTCGTCTCTAAGGAGATCGTGGAGGTGATCAAGATCGGAAATGTTATTGGTGATGATTCGAAGATGCAGAAGCAAATGGAGTGTGAGATCGAAGTGAATAGTAGTGTGTCGGTGGAGTCTCCGTCTCCGTCGTCTTCGTCGGAGAATATAGGTTGGGGGCGGTGGTATGGTTTGAAGGAATTGGAGAATGCGACGGATGGATTTTCTGAAGGGAACGTGATCGGAGAAGGAGGTTACGGAATTGTGTTCAGAGGAATTCTTCATGACGGTTCTGTGGTTGCTGTCAAGAATCTTCTTAACAATAAGGGTCAAGCTCAGAAAGAGTTTAAGGTGGAGGTTGAAGCCATTGGAAAAGTGAGGCATAAGAATTTGGTTGGGTTAGTTGGATATTGTGCAGAAGGTGCTCAAAGGATGCTTGTTTATGAATATGTTGACAACGGAAATTTAGAGCAGTGGTTGCATGGTGATGTAGGACCTGTTAGTCCCTTGACTTGGGATATAAGAATGAAGATTGCAGTTGGCACTGCAAAAGGGCTAGCCTATTTGCACGAAGGCTTAGAACCCAAAGTCGTCCACCGAGATGTAAAATCCAGCAATATTCTTTTGGACAAAAAATGGAATGCCAGAGTATCAGATTTTGGACTTGCCAAGCTCTTAGGCTCTGGCAAAAGCTACGTTACAACCCGTGTAATGGGGACATTTGGATATGTTTCACCCGAGTATGCAAGCACGGGAATGCTTAATGAGAGCAGCGATGTATATAGTTTTGGGATTCTACTCATGGAGCTAGTTACAGGAAGAAGTCCCATTGATTATTCTAGACCACCTGCAGAGATGAACTTGGTTGATTGGTTCAAAGGAATGGTAGCAAGTCGTCGCGGCGATGAGCTAGTAGATCCTTTTATTGAGATTCAGCCCTCTCCAAGATCTCTGAAGCGTGCTTTGCTGGTTTGTCTGCGTTGCATAGATTTGGATGCCTATAAGCGACCAAAGATGGGTCAAATTATTCATATGCTCGAGGCAGATGATTTTCCTTTTCGTTCTGATCTTCGAACTAGGGAGAAAGATTATGTTCCCTCTCAGGCAGACGAATCGAAAAAGGTTCTGTATCAAACAAGGCACGTGGAGCCCGTATATAAAGAGAGCTGGAGATGA 1374 0.4527 MATSANSSGGSLPLLNNRTSVAGLKLYVLILIFLSIVIAVTISLLIFLCIRRNRNSNKSEMRVKVKHSSGTIPLVSKEIVEVIKIGNVIGDDSKMQKQMECEIEVNSSVSVESPSPSSSSENIGWGRWYGLKELENATDGFSEGNVIGEGGYGIVFRGILHDGSVVAVKNLLNNKGQAQKEFKVEVEAIGKVRHKNLVGLVGYCAEGAQRMLVYEYVDNGNLEQWLHGDVGPVSPLTWDIRMKIAVGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKKWNARVSDFGLAKLLGSGKSYVTTRVMGTFGYVSPEYASTGMLNESSDVYSFGILLMELVTGRSPIDYSRPPAEMNLVDWFKGMVASRRGDELVDPFIEIQPSPRSLKRALLVCLRCIDLDAYKRPKMGQIIHMLEADDFPFRSDLRTREKDYVPSQADESKKVLYQTRHVEPVYKESWR 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00894 457 Gene3D Transferase(Phosphotransferase) domain 1 217 425 - -
Vivi3g00894 457 ProSiteProfiles Protein kinase domain profile. 141 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00894 457 Pfam Protein kinase domain 142 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00894 457 Gene3D Phosphorylase Kinase; domain 1 97 216 - -
Vivi3g00894 457 SMART serkin_6 141 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00894 457 ProSitePatterns Protein kinases ATP-binding region signature. 147 169 IPR017441 GO:0005524
Vivi3g00894 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Vivi3g00894 457 PANTHER OS01G0323000 PROTEIN 15 434 - -
Vivi3g00894 457 FunFam Probable serine/threonine-protein kinase At1g01540 121 216 - -
Vivi3g00894 457 FunFam Putative receptor-like serine/threonine-protein kinase 217 427 - -
Vivi3g00894 457 CDD STKc_IRAK 147 413 - -
Vivi3g00894 457 SUPERFAMILY Protein kinase-like (PK-like) 125 420 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00894 Vivi-Chr3 14669694 14672775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00894 114 413 Receptor kinase-like Gene Family AT4G02010 46.711 1.13e-91 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vivi3g00894 Pkinase 9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00894 - - gmx:100779420 686.026