Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00889 ATGGCTGAAGCCAATTCCCCAACAACATCTCCACCGTCTGATTCATCGCCACCTCCGTCACAAGACGCGGCAAATAATCCATCTTCACCACCACCATCACCACCAGCCGCTGATAATTCATCTCCACCGCCGTCATCCCCGCCACCATCTTCTCCACCACCATCATCACCTCCTCCGTCATCTCCACCTCCGTCATCTCCACCTCCTTCATCTTCACCTCCATCTTCGCCTCCTCCATCGTCTCCCTCTCCGTCTCCGCCTTCTGGCTCTTCTCCCTCTCCGCCTTCTGGCTCTTCTCCATCTCCGCCTTCGGACTCTTCTCCATCTCCGCCTCCGCCTTCTGACTCTTCTCCATCTCCTCCATCACCGCCGCCACCACCATCACCACAAGGCCGCTCACCATCGCCTCCAAACGGGCAAGATTTTTCTCCTCCTCCGCCACCACATCATCGCTTGTCACCTCCGAAATCATCTCACTCGAATAACAACCACAATTCAAATAACGAGAATGGAAGCCAATTGAGCACAGGGGCTATAATAGGAATTGCAAGTGGAGTTGGTGTGTTGCTCCTTGTCATTTCCATACTCCTTATTGTATGTTCAAGAAGAAAGAAGAGATCGCCACAACCTCACCTTCAATTCTACCCGAATCAACCACGCGGTCCAGGTCCTAATCATTATGAGTACAACAATAACCGTGATCACATACTTAATATTCCTCCACCACCAGGTGGTGGTGGAGGTTGGGGTCCACCACCACCTCCTGGTGGTGCTGGTGGAGGTTGGGCTTTACCACATGTAGCCAGTCTACCTCCCCAGCAATTCAGCAGTGACATGAGTACCTCGAGTTACTCCGGATCGCAAGGTCCTGTATTGCCACCACCGCATCCAACTGTTGCACTCGGGTTCAACCAGAGTTCATTCACTTACGATGAGTTATCGGTTGCTACTGGTGCATTTGCACAGCGAAACCTGCTGGGTCAGGGCGGATTTGGATATGTACATAAAGGTGTTCTTCCTAATGGTAAAGAAATAGCAGTGAAAAGCCTTAAGTCAACCAGTGGACAAGGTGATAGAGAATTTCAAGCTGAAGTTGATACTGTCAGCCGTGTCCATCATCGCTATCTTGTTTCGCTTGTTGGATACTGCATTTCTGATACTAAAAAGCTTCTTGTTTATGAATTTGTGCCTAACAAGACCCTTGAATATCACCTTCATGGAAAGGGTCGACCTGTGATGGATTGGGCCACAAGGCTTAAAATCGCGCTTGGATCGGCCAAAGGACTTGCTTATTTACATGAGGATTGTCATCCTCGTATCATTCACCGAGACATTAAGGGTGCAAACATTTTACTCGAAAACAATTTTGAAGCAAAAGTGGCAGATTTTGGATTGGCAAAGTTTAATCAAGACGCTAACACTCATATTTCTACTCGCGTCATGGGAACATTTGGGTATATGGCTCCTGAGTATGCATCGAGCGGTAAACTAACTGATAAATCTGATGTCTTCTCGTACGGTATTGTGCTTTTGGAGCTTATAACTGGACGACGACCGGTTGGATCCATGGGTGATTATGAAGAAGACAGTTTGGTTGATTGGGCTAGACCACTCTGTACAAAAGCATTGGAAAGTGGAATACTTACTGGATTGGTCGATATCCGATTAGAGGACAATTATGACAAAAACGAGGCAATACGAATGATAGCTTGTGCTGCTGCTAGTGTTAGGCACTCGGCAAAAAGACGTCCGAAAATGAGTCAGATTGTAAGAGTACTGGAAGGAGATTCTTCACTCGAAGCGCTCCATCAGGACGGAGTTAAAGCTGGACATAGTACTATGTACAGCAGCAGCACAAGTGGAGATTATGATGCAGGAGCATACAGTGCTGACATGAAAAAGTTCAAGAAAGTAGCGTTTGAAAGCGGCGTAACAAGCAGCGAGTACGGTGGAACGAGTGAGTATGGTCTCAATCTTTCGCTCTCTAGCAGTGACCAACCTTCTTCTGAGTATAGCAGGAGGACTGGAACTGCAACTGGAAATGTAAGCCGGATCAACACTCCATGA 2067 0.477 MAEANSPTTSPPSDSSPPPSQDAANNPSSPPPSPPAADNSSPPPSSPPPSSPPPSSPPPSSPPPSSPPPSSSPPSSPPPSSPSPSPPSGSSPSPPSGSSPSPPSDSSPSPPPPSDSSPSPPSPPPPPSPQGRSPSPPNGQDFSPPPPPHHRLSPPKSSHSNNNHNSNNENGSQLSTGAIIGIASGVGVLLLVISILLIVCSRRKKRSPQPHLQFYPNQPRGPGPNHYEYNNNRDHILNIPPPPGGGGGWGPPPPPGGAGGGWALPHVASLPPQQFSSDMSTSSYSGSQGPVLPPPHPTVALGFNQSSFTYDELSVATGAFAQRNLLGQGGFGYVHKGVLPNGKEIAVKSLKSTSGQGDREFQAEVDTVSRVHHRYLVSLVGYCISDTKKLLVYEFVPNKTLEYHLHGKGRPVMDWATRLKIALGSAKGLAYLHEDCHPRIIHRDIKGANILLENNFEAKVADFGLAKFNQDANTHISTRVMGTFGYMAPEYASSGKLTDKSDVFSYGIVLLELITGRRPVGSMGDYEEDSLVDWARPLCTKALESGILTGLVDIRLEDNYDKNEAIRMIACAAASVRHSAKRRPKMSQIVRVLEGDSSLEALHQDGVKAGHSTMYSSSTSGDYDAGAYSADMKKFKKVAFESGVTSSEYGGTSEYGLNLSLSSSDQPSSEYSRRTGTATGNVSRINTP 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00889 688 MobiDBLite consensus disorder prediction 11 153 - -
Vivi3g00889 688 FunFam Proline-rich receptor-like protein kinase PERK1 396 604 - -
Vivi3g00889 688 SUPERFAMILY Protein kinase-like (PK-like) 300 593 IPR011009 -
Vivi3g00889 688 MobiDBLite consensus disorder prediction 244 259 - -
Vivi3g00889 688 Pfam Protein tyrosine and serine/threonine kinase 323 527 IPR001245 GO:0004672|GO:0006468
Vivi3g00889 688 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Vivi3g00889 688 Gene3D Transferase(Phosphotransferase) domain 1 396 611 - -
Vivi3g00889 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Vivi3g00889 688 Gene3D Phosphorylase Kinase; domain 1 297 395 - -
Vivi3g00889 688 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 185 638 IPR047117 -
Vivi3g00889 688 MobiDBLite consensus disorder prediction 154 170 - -
Vivi3g00889 688 MobiDBLite consensus disorder prediction 647 688 - -
Vivi3g00889 688 SMART serkin_6 320 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00889 688 MobiDBLite consensus disorder prediction 1 170 - -
Vivi3g00889 688 ProSiteProfiles Protein kinase domain profile. 320 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00889 688 FunFam proline-rich receptor-like protein kinase PERK1 298 395 - -
Vivi3g00889 688 PRINTS Proline rich extensin signature 46 63 - -
Vivi3g00889 688 PRINTS Proline rich extensin signature 66 91 - -
Vivi3g00889 688 PRINTS Proline rich extensin signature 7 28 - -
Vivi3g00889 688 PRINTS Proline rich extensin signature 28 44 - -
Vivi3g00889 688 MobiDBLite consensus disorder prediction 205 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00889 Vivi-Chr3 14577334 14580670 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00889 166 673 Trihelix Transcription Factor Family AT1G70460 49.412 1.43e-156 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vivi3g00889 PK_Tyr_Ser-Thr 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00889 - - psat:127085055 855.129