Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00860 ATGTTGCACTGTTTGAATGCTTCCGGGAATTTACCTACTGAGAGTTGTTCATCCGACATAACAGTGCTGGAAAGACAAACCGAAAGAATGAAGTGGCAACAACATCAACAACAAGATCAAGGTTACTTCAATGGTTCCATGTTTCGTTCTTCTGTTCAACAAGTTCAGAAATCTCAAGATTTAGTGGCTCTTCAAATTCCACCTGCAATTTCAAGAACTTTTAGTTCTCCACCTGTTCTCGTCGATGCTAAATTCATTGATTCTAGGACCGAGAAAGAGAATTGTTCTAAGAAGAGGAAATCGGAAAAGGCACATCATAATCATAAGCTCAAGGTTGTTGGTGAAATTGAGAACAAAGAAAAGAGGATTAAACTAGGTGCTGAAGACGGTGAATCGAAAATCACAGGGTACCATAGCACAAAAAAGAATACAAATAGCAACAAGAACAACAAGGAAAACTGTGCAGCAGCAGAAGGTACTTCAAACTCAAAGGGAAATTCAAAAGCTTCTGAAAATCAAAAGCTTGACTACATTCATGTTCGAGCACGTCGCGGCCAAGCCACTGATAGTCATAGCTTAGCCGAAAGAGTTAGAAGGGAAAAGATTAGTGAAAGAATGAAGTATTTGCAAGATTTAGTACCAGGATGCAACAAAATTACAGGAAAAGCTGGAATGCTTGATGAAATTATCAATTATGTTCAGTCTCTTCAAAGACAAGTTGAGTTTTTGTCAATGAAATTAGCTACTGTGAATCCAAGGCTTGATTTCAACATTGATGATTTGTTTGAAAAAGAGGTGTTTCCAACTTGTGATGCAAATGCAACTTTTCAAGCCTTGGGAATTTCATCAGAAATGAATAATACCAATCCATATCTTCAGTTCAATTCACCACATCAATTTGTTTCTTATGGTGGATTAGAGGCTGGAATGAACCCTATAGATATGGGGCTAAAGAGGAGCATAAGCGCCCCTGTACCCATTCCTGAGACTTTTATTGATTCTTCTTCTTTCCCTCAAATTCTACCTCCTACAACATGGGAAGGTGATTTCCCTAACCTATACAACATGAATTTTGATCAAACAAGAGCGACATCTTTTCCTTCTCAACCTCAGTTTTTCACAGGTCTAGTTGAAGCTAGCAATCTAAAAATCGAGATGCAGTAG 1164 0.3814 MLHCLNASGNLPTESCSSDITVLERQTERMKWQQHQQQDQGYFNGSMFRSSVQQVQKSQDLVALQIPPAISRTFSSPPVLVDAKFIDSRTEKENCSKKRKSEKAHHNHKLKVVGEIENKEKRIKLGAEDGESKITGYHSTKKNTNSNKNNKENCAAAEGTSNSKGNSKASENQKLDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIDDLFEKEVFPTCDANATFQALGISSEMNNTNPYLQFNSPHQFVSYGGLEAGMNPIDMGLKRSISAPVPIPETFIDSSSFPQILPPTTWEGDFPNLYNMNFDQTRATSFPSQPQFFTGLVEASNLKIEMQ 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00860 387 SMART finulus 192 242 IPR011598 GO:0046983
Vivi3g00860 387 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 236 IPR011598 GO:0046983
Vivi3g00860 387 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 87 298 IPR024097 GO:0006355
Vivi3g00860 387 CDD bHLH_AtBPE_like 176 261 - -
Vivi3g00860 387 MobiDBLite consensus disorder prediction 133 173 - -
Vivi3g00860 387 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 255 IPR036638 GO:0046983
Vivi3g00860 387 FunFam Basic helix-loop-helix transcription factor 183 255 - -
Vivi3g00860 387 Pfam Helix-loop-helix DNA-binding domain 190 237 IPR011598 GO:0046983
Vivi3g00860 387 MobiDBLite consensus disorder prediction 137 173 - -
Vivi3g00860 387 Gene3D - 183 256 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00860 Vivi-Chr3 14223553 14226714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00860 19 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 45.522 2.48e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi3g00860 HLH 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00860 - - tpra:123899220 551.206