Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00859 ATGTCTTCAAGTTGGACACCAAAACAAAACAAGTTGTTCGAAAAAGCACTTGCGAAATTCGACAAAGATACCCCGGATCGTTGGCAAAATGTAGCGAAAGCGGTTGGTGGTAAATCAGTTGAGGAAGTTAAGAGACACTATGAGATACTCTTGGAGGATCTCAAACACATTGAGTCTGGTCATGTTCCTATTCCAAATTACAAATCCACGTGA 213 0.4085 MSSSWTPKQNKLFEKALAKFDKDTPDRWQNVAKAVGGKSVEEVKRHYEILLEDLKHIESGHVPIPNYKST 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00859 70 Pfam Myb-like DNA-binding domain 3 47 IPR001005 -
Vivi3g00859 70 SUPERFAMILY Homeodomain-like 3 59 IPR009057 -
Vivi3g00859 70 FunFam Transcription factor SRM1 1 64 - -
Vivi3g00859 70 Gene3D - 1 64 - -
Vivi3g00859 70 SMART sant 1 53 IPR001005 -
Vivi3g00859 70 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Vivi3g00859 70 CDD SANT 4 51 IPR001005 -
Vivi3g00859 70 ProSiteProfiles SANT domain profile. 1 55 IPR017884 -
Vivi3g00859 70 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 69 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00859 Vivi-Chr3 14184676 14185243 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi3g00859 Myb_DNA-binding 2.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00859 - - aprc:113865826 136.346