Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00858 ATGGCTGATTCTGAGTACCGATGCTTTGTTGGTGGACTCGCCTGGGCCACCGACAACGACGCTCTCGACAAAGCGTTTTCCACCTTTGGCGAAATCGTCGAATCGAAGGTTATCCTTGATCGTGAAACTGGAAGATCGAGAGGATTTGGATTTGTGACGTTTGCATCGGAGCAGTCGATGAAAGATGCTATTGAAGGGATGAACGGCCAGGATCTAGATGGACGTAACATTACTGTGAACGAGGCGCAAAGCCGTGGCAGTGGTGGTGGCGGTGGAGGTGGATACCGTGGAGGAGGTGGTGGAGGATATGGAGGTGGTGGTTATGGAGGAGGTGGTGGTTATAACCGTGGTGGAGGAGGTGGTGGTTACGGAGGAGGAGGTGGACGTCGTGATGGAGGAGGTGGCGGATATGGTGGAGGAGGTGGTTATGGAGGTGGTGGTGGCGGATATGGTGGAGGAGGTGGACGGGACCGTGGTTATGGAGATGGTGGATCTCGGTATTCAAGAGGAGGTGGTGGTGGTGGTTCTGAAGGAGACTGGAGGAGTTAA 549 0.5446 MADSEYRCFVGGLAWATDNDALDKAFSTFGEIVESKVILDRETGRSRGFGFVTFASEQSMKDAIEGMNGQDLDGRNITVNEAQSRGSGGGGGGGYRGGGGGGYGGGGYGGGGGYNRGGGGGGYGGGGGRRDGGGGGYGGGGGYGGGGGGYGGGGGRDRGYGDGGSRYSRGGGGGGSEGDWRS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00858 182 SUPERFAMILY RNA-binding domain, RBD 4 114 IPR035979 GO:0003676
Vivi3g00858 182 SMART rrm1_1 7 80 IPR000504 GO:0003723
Vivi3g00858 182 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 7 174 - -
Vivi3g00858 182 MobiDBLite consensus disorder prediction 147 182 - -
Vivi3g00858 182 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 84 IPR000504 GO:0003723
Vivi3g00858 182 FunFam Glycine-rich RNA-binding protein GRP1A 1 111 - -
Vivi3g00858 182 CDD RRM2_NsCP33_like 7 82 - -
Vivi3g00858 182 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Vivi3g00858 182 Gene3D - 1 104 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00858 Vivi-Chr3 14168393 14169438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00858 8 86 Eukaryotic Initiation Factors Gene Family AT4G34110 36.709 5.44e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00858 - - ccaj:109800681 153.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00858 3 14168393 14169438 Vivi3g00858 3 14168393 14169438 ECH