Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00849 ATGGCTGAAGCCAATTCCCCAACAACATCTCCACCGTCTGATTCATCGCCACCTCCGTCACAAGACGCGGCAAATAATCCATCTTCACCACCACCATCACCACCAGCCGCTGATAATTCATCTCCACCACCGTCATCCCCGCCACCATCTTCTCCACCACCATCATCACCTCCTCCGTCATCTCCACCTCCGTCATCTTCACCTCCATCTTCACCTCCTCCATCGTCTCCCTCTTCGCCTCCTCCATCATCTCCGTCTCCCTCTCCGCCTTCTGACTCTTCTCCATCTCCGCCTTCTGGCTCTTCTCCATCTCCACCTCCGCCTTCGGACTCTTCTCCATCTCCTCCATCACCGCCGCCACCTCCATCATCACAAGGCCGCTCACCATCGCCTCCAAACGGGCAAGATTTTTCTCCTCCTCCTCCGCCACCACATCATCGTTTGTCACCTCCAAAATCATCTCACTCGAATAACAACCACAATTCAAATAATGAGAATGGAAGCCAATTGAGCACAGGGGCTATAATAGGAATTGCAAGTGGAGTTGGTGTATTGCTCCTTGTCATTTCCATACTCCTTATTGTATGTTCAAGAAGAAAGAAGAGATCGCCACAACCTCACCTTCAATTCTACCCGAATCAACCACCACGCGGTCCAGGTCCTAATCATTATGAGTACAACAATAACCGTGATCACATACTTAATATTCCTCCACCACCAGGTGGTGGTGGAGGTTGGGGTCCACCACCACCTCCTGGTGGTGGTGGTGGTGGAGGTTGGGCTTTACCACATGTAGCCAGTCTACCTCCCCAGCAATTCAGCAGTGACATGAGTACCTCGAGTTACTCCGGATCGCAAGGTCCTGTATTGCCACCACCACATCCAACGGTTGCACTCGGGTTCAACCAGAGCTCATTCACTTACGATGAGTTATCGGTTGCTACTGGTGCATTTGCACAGCGAAACCTGTTGGGTCAAGGCGGATTTGGATATGTACATAAAGGTGTTCTTCCTAATGGTAAAGAAATAGCAGTGAAAAGCCTCAAGTCAACCAGTGGACAAGGTGATAGAGAATTCCAAGCTGAAGTTGATACTGTCAGCCGCGTCCACCATCGCTATCTTGTTTCGCTTGTTGGATACTGCATTTCTGATTCTAAAAAGCTTCTTGTTTATGAATTTGTTCCTAACAAGACTCTTGAATATCACCTTCATGGAAAGGGTCGACCTGTGATGGATTGGGCCACAAGGCTTAAAATCGCGCTTGGATCGGCCAAAGGACTTGCTTATTTACACGAGGATTGTCATCCTCGTATCATTCACCGAGACATAAAGGGTGCAAACATTTTACTCGAAAACAATTTTGAAGCAAAAGTGGCAGATTTTGGATTGGCAAAGTTTAATCAAGACGCTAACACTCACATTTCTACTCGCGTCATGGGAACATTTGGGTATATGGCTCCTGAGTATGCATCGAGCGGTAAACTAACTGATAAATCTGATGTCTTCTCGTACGGTATTGTGCTTTTGGAGCTCATAACTGGACGACGACCGGTTGGATCCATGGGTGATTATGAAGAAGACAGTTTGGTTGATTGGGCTAGACCACTTTGTACAAAAGCATTGGAAAGTGGAATACTTACTGGATTGGTCGATATCCGATTAGAGGACAATTATGACAAAAACGAGGCAATACGAATGATAGCTTGTGCTGCTGCTAGTGTTAGGCACTCGGCAAAAAGGCGTCCGAAAATGAGTCAGATTGTAAGAGTACTGGAGGGAGATTCTTCACTCGAAGCGCTTCATCAGGACGGAGTTAAAGCTGGACATAGTACTATGTACAGCAGCAGCACAAGTGGAGATTATGATGCAGGAGCATACAGTGCTGACATGAAAAAGTTCAAGAAAGTAGCATTTGAAAGCGGCGTAACAAGCAGCGAGTACGGTGGAACGAGTGAGTATGGTCTCAATCTTTCGCTCTCTAGCAGTGACCAACCTTCTTCTGAATATAGCAGGAAGACTGGAACTGCAACTGGAAATGTAAGCCGGATCAACACTCCATGA 2061 0.4736 MAEANSPTTSPPSDSSPPPSQDAANNPSSPPPSPPAADNSSPPPSSPPPSSPPPSSPPPSSPPPSSSPPSSPPPSSPSSPPPSSPSPSPPSDSSPSPPSGSSPSPPPPSDSSPSPPSPPPPPSSQGRSPSPPNGQDFSPPPPPPHHRLSPPKSSHSNNNHNSNNENGSQLSTGAIIGIASGVGVLLLVISILLIVCSRRKKRSPQPHLQFYPNQPPRGPGPNHYEYNNNRDHILNIPPPPGGGGGWGPPPPPGGGGGGGWALPHVASLPPQQFSSDMSTSSYSGSQGPVLPPPHPTVALGFNQSSFTYDELSVATGAFAQRNLLGQGGFGYVHKGVLPNGKEIAVKSLKSTSGQGDREFQAEVDTVSRVHHRYLVSLVGYCISDSKKLLVYEFVPNKTLEYHLHGKGRPVMDWATRLKIALGSAKGLAYLHEDCHPRIIHRDIKGANILLENNFEAKVADFGLAKFNQDANTHISTRVMGTFGYMAPEYASSGKLTDKSDVFSYGIVLLELITGRRPVGSMGDYEEDSLVDWARPLCTKALESGILTGLVDIRLEDNYDKNEAIRMIACAAASVRHSAKRRPKMSQIVRVLEGDSSLEALHQDGVKAGHSTMYSSSTSGDYDAGAYSADMKKFKKVAFESGVTSSEYGGTSEYGLNLSLSSSDQPSSEYSRKTGTATGNVSRINTP 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00849 686 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Vivi3g00849 686 MobiDBLite consensus disorder prediction 644 686 - -
Vivi3g00849 686 MobiDBLite consensus disorder prediction 1 166 - -
Vivi3g00849 686 FunFam proline-rich receptor-like protein kinase PERK1 296 393 - -
Vivi3g00849 686 MobiDBLite consensus disorder prediction 150 166 - -
Vivi3g00849 686 FunFam Proline-rich receptor-like protein kinase PERK1 394 602 - -
Vivi3g00849 686 MobiDBLite consensus disorder prediction 268 287 - -
Vivi3g00849 686 MobiDBLite consensus disorder prediction 241 256 - -
Vivi3g00849 686 Gene3D Phosphorylase Kinase; domain 1 295 393 - -
Vivi3g00849 686 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 181 642 IPR047117 -
Vivi3g00849 686 MobiDBLite consensus disorder prediction 11 149 - -
Vivi3g00849 686 Pfam Protein tyrosine and serine/threonine kinase 321 525 IPR001245 GO:0004672|GO:0006468
Vivi3g00849 686 Gene3D Transferase(Phosphotransferase) domain 1 394 609 - -
Vivi3g00849 686 PRINTS Proline rich extensin signature 64 89 - -
Vivi3g00849 686 PRINTS Proline rich extensin signature 7 28 - -
Vivi3g00849 686 PRINTS Proline rich extensin signature 28 44 - -
Vivi3g00849 686 PRINTS Proline rich extensin signature 46 63 - -
Vivi3g00849 686 MobiDBLite consensus disorder prediction 201 289 - -
Vivi3g00849 686 ProSiteProfiles Protein kinase domain profile. 318 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00849 686 SMART serkin_6 318 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00849 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Vivi3g00849 686 SUPERFAMILY Protein kinase-like (PK-like) 298 591 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00849 Vivi-Chr3 13993317 13996686 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00849 162 671 Trihelix Transcription Factor Family AT1G70460 49.123 3.69e-157 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vivi3g00849 PK_Tyr_Ser-Thr 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00849 - - psat:127085055 831.632