Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00821 ATGGAAGGCGGTGAGAGAGTCGGAGACGATATGGATCTCGTTCATTCGGAAAATGCTGCTGCTGTTGGTGCTGGTGGTGCTGTTGGTGGTTCTGTTTCTCAGGATCAAGAAATGGTTGATCAAGGTGATGCTGATGCAGCAAATGTCCATTCTACCCCTGCTCCTCAGGCTAAAGTTAAGAATGTGACTGAAATGAATAATCATAGTGTGATAAATAGTGCTAATGAGATGAGTGGTTATGATGAGACTGGTACTGCGATGGAACGAGAGGCGTTTATGAAAGAGCTTGAGAGTTTTTATAGATCGAGGTCGTTGGAGTTTAAGCCTCCTAAGTTTTATGGAGTGCCATTGAATTGCCTCAAGTTATGGAGAGCTGTTATCAAACTGGGTGGCTATGAATTGGTAACTGGATCGAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCTCCTAAGACTTGCACTACAGTCTCATGGACATTTAGAATCTTTTATGAGAAGGCGCTTTTAGAGTATGAAAAGCATAAGAGAGAGACCGGGGAGCTGCAGCTCCCTGTTAGTACACTCCATCAACCTTCAAGTGTGGAAAAAGAGACCACTGTTTATCAGGCTCCAGGCTCAGGTAGGGCTCGGAGGGATGCAGCAGCTCGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATACGGTGAGGTTGCTGAGTCAGCTGTTAAGGACAAGACCTTCAGTCCCACACCAAAACGTGAAAAGAACCTCAAAAGTATCGGCGTGATCAACAAACAGAGGACACCATCTGGTATGGACCATGCTGACAAAGCTGCAAATATAGAAGGAGACAGGCAATTGGTCACTGCAGTAGTGGACATTGGACCTCCAGCTGACTGGGTCAAGATCAATGTGCGGGAAACGAAGGATTGTTTTGAAGTGTATGCACTGGTTCCTGGGCTCCTTCGCGAGGAGGTTCGGGTTCAATCCGATCCAGTTGGACGACTTGTTATAACTGGTACGCCAGAACATGTTGACAATCCATGGGGTATCACCCCCTTCAAAAAGGTTGTGAACTTACCTGCAAGAATTGATCCACTTCAGACATCTGCTATTGTTAGTTTGCACGGTCGACTATTTGTACGCGTTCCTTTTGAGCAGGGAGCTGTATGA 1161 0.4677 MEGGERVGDDMDLVHSENAAAVGAGGAVGGSVSQDQEMVDQGDADAANVHSTPAPQAKVKNVTEMNNHSVINSANEMSGYDETGTAMEREAFMKELESFYRSRSLEFKPPKFYGVPLNCLKLWRAVIKLGGYELVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRETGELQLPVSTLHQPSSVEKETTVYQAPGSGRARRDAAARAMQGWHAQRLLGYGEVAESAVKDKTFSPTPKREKNLKSIGVINKQRTPSGMDHADKAANIEGDRQLVTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGTPEHVDNPWGITPFKKVVNLPARIDPLQTSAIVSLHGRLFVRVPFEQGAV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00821 386 ProSiteProfiles ARID domain profile. 86 177 IPR001606 GO:0003677
Vivi3g00821 386 SMART ARID_2 83 173 - -
Vivi3g00821 386 SUPERFAMILY ARID-like 81 185 IPR036431 GO:0003677
Vivi3g00821 386 SMART bright_3 87 178 IPR001606 GO:0003677
Vivi3g00821 386 MobiDBLite consensus disorder prediction 24 57 - -
Vivi3g00821 386 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 37 383 IPR045147 GO:0006357
Vivi3g00821 386 Gene3D - 283 385 IPR008978 -
Vivi3g00821 386 SUPERFAMILY HSP20-like chaperones 294 381 IPR008978 -
Vivi3g00821 386 Gene3D - 86 186 IPR036431 GO:0003677
Vivi3g00821 386 CDD ACD_sHsps_p23-like 301 380 - -
Vivi3g00821 386 FunFam AT-rich interactive domain-containing protein 3 86 185 - -
Vivi3g00821 386 CDD ARID 88 173 - -
Vivi3g00821 386 FunFam AT-rich interactive domain-containing protein 3 277 385 - -
Vivi3g00821 386 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 285 386 IPR002068 -
Vivi3g00821 386 Pfam ARID/BRIGHT DNA binding domain 88 173 IPR001606 GO:0003677
Vivi3g00821 386 Pfam Hsp20/alpha crystallin family 301 382 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00821 Vivi-Chr3 13369479 13375918 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00821 81 383 ARID Transcription Factor Family AT1G76510 72.937 1.22e-153 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi3g00821 ARID 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00821 - - psat:127088333 717.998