Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00819 ATGTCTGACCATGATGCTGAGAGAAACCAAGAGCTTCAGCTATTCACCGCACCACAACCAGAAAACGAAACACCAAACACTAACACCATCGTAGATAACAATCATCATGCATCTTCCTCCACTGTCTCTCGTCGCCCCCGAGGGCGTCCTCTTGGCTCCAGGAACAAACCAAAGGTGCCTGTCATAGTAACACATGACAACACTAATGTTTTAAATTCTCATATGATTGAGATTAGTGTTGGAGACGACATATCAAAAAGTGTCGTTGATTACGCTCATCGTCAGGGGCGGGGCATATGCATTCTCAATGGAGATGGACTGGTGACACATGTTAGACTTTGCCTACCCACAGGAAGAGTTGTAATCCTACAAGGAAGGTTTGAGATTCTTTTGATATCTGGGACAATTTTCCCAATGCCAACCTCAATGAATGTTGGAGGATTGACTGTTTACTTATCAGGAACAAATGAACAAGTGATTGGGGGAAGTGTAATGCCCCCTCTGGTGGCTTCAAGTTCGGTGACTCTGACAGTTGTTTCCTTTGAAAACACTGCACCAGAAAAGCTTTCTTCGGTGGTAATTGATCGAAAAGAACATCACCTCCCATGCCTCGACGAAGTTGTACAAGTGAGAGTACGTGATGATGACTTATTCAATGATAGAGATTCAACATTTAGAACAAGAAACACGATGAGTAGCAACATCAATCATCCATCATCCTCTACTCAAGATCGTATATTCGAATGGGATACTACTGCAATCGTAACTCCTCCACCCAAACATCCCCGCTTCTAG 795 0.4365 MSDHDAERNQELQLFTAPQPENETPNTNTIVDNNHHASSSTVSRRPRGRPLGSRNKPKVPVIVTHDNTNVLNSHMIEISVGDDISKSVVDYAHRQGRGICILNGDGLVTHVRLCLPTGRVVILQGRFEILLISGTIFPMPTSMNVGGLTVYLSGTNEQVIGGSVMPPLVASSSVTLTVVSFENTAPEKLSSVVIDRKEHHLPCLDEVVQVRVRDDDLFNDRDSTFRTRNTMSSNINHPSSSTQDRIFEWDTTAIVTPPPKHPRF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00819 264 Gene3D - 72 200 - -
Vivi3g00819 264 MobiDBLite consensus disorder prediction 12 46 - -
Vivi3g00819 264 MobiDBLite consensus disorder prediction 1 59 - -
Vivi3g00819 264 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 191 IPR014476 GO:0003680
Vivi3g00819 264 CDD DUF296 72 181 IPR005175 -
Vivi3g00819 264 Pfam Plants and Prokaryotes Conserved (PCC) domain 73 183 IPR005175 -
Vivi3g00819 264 ProSiteProfiles PPC domain profile profile. 68 202 IPR005175 -
Vivi3g00819 264 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00819 Vivi-Chr3 13350541 13351335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00819 38 189 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 51.534 6.72e-43 146