Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00817 ATGGCGTATCCGGGTCCGGGTTCGGGATCGAGTTCGAGTTCGGGGTTTCAATTGCTGAATTCTCCGTTTGGAGATACGACTTATACTAAGGTGTTTGTTGGGGGATTGGCGTGGGAGACGCAGAGCGAGACTATGCGGCGTTACTTTGATCAATTTGGGGAAATTCTTGAAGCCGTTGTTATTACTGATAAGAATACAGGACGATCTAAAGGCTATGGTTTTGTGACTTTCCGTGATCCAGAAGCTGCTAGGAGAGCCTGTGTTGATCCAAGTCCTGTTATTGATGGTAGAAGGGCCAATTGTAATTTGGCTTCGCTTGGTCGTCCGCGCCCTCCTATCCCTTTTGTAGGACGGGTAAGACCAGCATCCCCTTATGTTGGAAGTTTGCAACCAGCCCGTGGTGCTTACGTTGGAAGTTATGGCTACCAGCAACCACTTTCCTATGGCTATCAACAAGGAATGGTTTATCCTCCTTATGGGTATACGGCATATGGACCTGAGTACGTCTACCCACAGAGTATGTACAACCCTTATGCGGGCCAACAATACCTTCAGATATATGGCGTACCGGGTGGGGTGAATACAGCCATTTATCCTTATGGACAAATGGGTCAAGCTATTCCTGGTGGTCATGGTTATACAGCAATGCAGGGTTATACATTACCAGGTCATCAGGTTGTTCCATATGCTGGATCCAGTGTTAATGCAATGACAACTTCACCTATGCCTGCCATTCAAGCCTCATATCCTAGTGGAATTGGTGCACCAGTTCCAGGCCAACAATTTATTGTTTCTCCTCAGTTCATACAAGGTAGCGGTCCTGACCAAACAGCTGGTTGA 840 0.4726 MAYPGPGSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFDQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPSPVIDGRRANCNLASLGRPRPPIPFVGRVRPASPYVGSLQPARGAYVGSYGYQQPLSYGYQQGMVYPPYGYTAYGPEYVYPQSMYNPYAGQQYLQIYGVPGGVNTAIYPYGQMGQAIPGGHGYTAMQGYTLPGHQVVPYAGSSVNAMTTSPMPAIQASYPSGIGAPVPGQQFIVSPQFIQGSGPDQTAG 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00817 279 SUPERFAMILY RNA-binding domain, RBD 28 116 IPR035979 GO:0003676
Vivi3g00817 279 Gene3D - 24 108 IPR012677 -
Vivi3g00817 279 SMART rrm1_1 30 102 IPR000504 GO:0003723
Vivi3g00817 279 CDD RRM_RBM24_RBM38_like 29 104 - -
Vivi3g00817 279 PANTHER BOULE-RELATED 10 248 - -
Vivi3g00817 279 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 23 110 - -
Vivi3g00817 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 86 IPR000504 GO:0003723
Vivi3g00817 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 106 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00817 Vivi-Chr3 13291547 13296239 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00817 18 184 C2H2 Transcription Factor Family AT2G19380 30.899 3.51e-17 79.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00817 3 13291547 13296239 Vivi3g00817 3 13291547 13296239 ECH