Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00816 ATGGCGTATCCGGGTCCGGGTTCGGGATCGAGTTCGAGTTCGGGGTTTCAATTGCTGAATTCTCCGTTTGGAGATACGACTTATACTAAGGTGTTTGTTGGGGGATTGGCGTGGGAGACGCAGAGCGAGACTATGCGGCGTTACTTTGATCAATTTGGGGAAATTCTTGAAGCCGTTGTTATTACTGATAAGAATACAGGACGATCTAAAGGCTATGGTTTTGTGACTTTCCGTGATCCAGAAGCTGCTAGGAGAGCCTGTGTTGATCCAAGTCCTGTTATTGATGGTAGAAGGGCCAATTGTAATTTGGCTTCGCTTGGTCGTCCGCGCCCTCCTATCCCTTTTGGACGGGTAAGACCAGCATCCCCTTATGTTGGAAGTTTGCAACCAGCCCGTGGTGCTTACGTTGGAAGTTATGGCTACCAGCAACCACTTTCCTATGGCTATCAACAAGGAATGGTTTATCCTCCTTATGGGTATACGGCATATGGACCTGAGTACGTCTACCCACAGAGTATGTACAACCCTTATGCGGGCCAACAATACCTTCAGATATATGGCGTACCGGGTGGGGTGAATACAGCCATTTATCCTTATGGACAAATGGGTCAAGCTATTCCTGGTGGTCATGGTTATACAGCAATGCAGGGTTATACATTACCAGGTCATCAGGTTGTTCCATATGCTGGATCCAGTGTTAATGCAATGACAACTTCACCTATGCCTGCCATTCAAGCCTCATATCCTAGTGGAATTGGTGCACCAGTTCCAGGCCAACAATTTATTGTTTCTCCTCAGTTCATACAAGGTAGCGGTCCTGACCAAACAGCTGGTTGA 837 0.4731 MAYPGPGSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFDQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPSPVIDGRRANCNLASLGRPRPPIPFGRVRPASPYVGSLQPARGAYVGSYGYQQPLSYGYQQGMVYPPYGYTAYGPEYVYPQSMYNPYAGQQYLQIYGVPGGVNTAIYPYGQMGQAIPGGHGYTAMQGYTLPGHQVVPYAGSSVNAMTTSPMPAIQASYPSGIGAPVPGQQFIVSPQFIQGSGPDQTAG 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00816 278 SMART rrm1_1 30 102 IPR000504 GO:0003723
Vivi3g00816 278 CDD RRM_RBM24_RBM38_like 29 104 - -
Vivi3g00816 278 Gene3D - 24 108 IPR012677 -
Vivi3g00816 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 86 IPR000504 GO:0003723
Vivi3g00816 278 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 23 110 - -
Vivi3g00816 278 SUPERFAMILY RNA-binding domain, RBD 28 116 IPR035979 GO:0003676
Vivi3g00816 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 106 IPR000504 GO:0003723
Vivi3g00816 278 PANTHER BOULE-RELATED 10 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00816 Vivi-Chr3 13291546 13296239 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00816 18 183 C2H2 Transcription Factor Family AT2G19380 32.022 2.43e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00816 - - gmx:100782606 508.064