Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00813 ATGTCGAGATCTGGATTGGGCTATGAGTGTGAGTTACCTCCTGGATTCGACAAAGCTTATGAATCACCACCACAACCAAACCTATTGGGTTCACAAAGTACCTTTACTCACCATCATTTCGCTCTTCCTCCTGAACATCTAAATTATCCACATGGAATTATTAGCCACTGTGATGCGCCAATTTCTCCAACGACTACTTTGCCTTCCACCTCAACGAACACCCAGAAGAAGCGTAGAGGTCGGCCTTACAGTTCTCGCAACCAAAAGCCCCGTATGAATATCGTTTATGGAATGAATATGTCTTCACTTAAGTCTCACATGATCATTGTGAATACAGAAGAGAATGTGTTGGAGAAGATTACAGCATTTATCTATAGTCTCTCAAAAAATGTAACCATTATCTCATCAAATGGGACAATTTCTAAAGTAAGATTTTCTCAATCACCATCATCTGCTGAAACCGTGACTTATGAGGGACGATTTGAGATCCTATCATTGAAAGGTTCTGTGTTTGTTGGCACAAATAAAAGTGAACAGGAAATAGTTGCTGCAATAAAGGGGTCATTTGTTTCATTATCAAATGGTCGTGTATTTGGTGGTAAAATTGATGGTGTTCTGATTGCTGCTACTCCTGTTCAGATAATACTAGGGAGTTTTTTTCCGGAGGGTCGAGAAGTAGTATTGTCCGGCCCAAATGATCCTCCAACAGAAGGCCCAAGCAACCCTCCATCTGTGGTTCATCCATCGACAGGAATATTGATATCCTAG 768 0.4102 MSRSGLGYECELPPGFDKAYESPPQPNLLGSQSTFTHHHFALPPEHLNYPHGIISHCDAPISPTTTLPSTSTNTQKKRRGRPYSSRNQKPRMNIVYGMNMSSLKSHMIIVNTEENVLEKITAFIYSLSKNVTIISSNGTISKVRFSQSPSSAETVTYEGRFEILSLKGSVFVGTNKSEQEIVAAIKGSFVSLSNGRVFGGKIDGVLIAATPVQIILGSFFPEGREVVLSGPNDPPTEGPSNPPSVVHPSTGILIS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00813 255 MobiDBLite consensus disorder prediction 60 78 - -
Vivi3g00813 255 ProSiteProfiles PPC domain profile profile. 100 244 IPR005175 -
Vivi3g00813 255 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 61 242 IPR039605 GO:0003680
Vivi3g00813 255 Pfam Plants and Prokaryotes Conserved (PCC) domain 105 219 IPR005175 -
Vivi3g00813 255 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 221 - -
Vivi3g00813 255 MobiDBLite consensus disorder prediction 229 255 - -
Vivi3g00813 255 CDD DUF296 104 219 IPR005175 -
Vivi3g00813 255 Gene3D - 104 228 - -
Vivi3g00813 255 MobiDBLite consensus disorder prediction 60 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00813 Vivi-Chr3 13255466 13258134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00813 64 225 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 39.634 6.41e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00813 - - psat:127084195 379.793