Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00811 ATGATGCTAGCAATGGAAGAAGTACTGTGTGAACTCAGTGACCATGAAAAGAAAAACGAGCAAGGTCTTCCACCTGGTTTCAGGTTTCACCCTACTGATGAAGAACTCATTACGTTCTATTTAGCTTCCAAGGTTTTCAAAAACACCTTTTTCAATAATGTCAAGTTTGCTGAAGTTGATCTCAACAGATGTGAGCCATGGGAACTTCCAGAAATGGCGAAGATGGGAGAAAGAGAATGGTATTTGTTCAGTTTGCGAGACAGGAAATACCCAACTGGTCTAAGAACAAATAGAGCAACTGGAGCTGGTTACTGGAAAGCCACTGGGAAAGACAAAGAAGTTTTCAGCAACAACAGCACAAGAGCTTTACTTGGCATGAAGAAGACTCTTGTTTTCTACAAAGGAAGGGCCCCTCGTGGTGAAAAGACCAAATGGGTCATGCATGAGTATCGCTTACATACTCATTTTTCACCTTCAACTTGCAAGGAAGAGTGGGTGATATGCAGGATATTTCATAAATCAGTGGAAAAAAGAAGTTCACTATTACTTCAAGTTCAAGGACATTTAGGTGTTAACAATAATTCTAATTTAACCCCCCAAAAAAGCTGTTTACCCCCTCCTCCTCCTCCTTCATTTACACAATCTCATAATAATTTCCCATTACATGCATTTCAAACTTCTTTCCACCAAGTCACAAACACCAGAAACAACAATAATCAATCTTTGGAGCTACTCTTCAAGTCACAAACCATTCCAAAAACTGAGGCTATGTTCTATGAGCAGTACCAACCACAGTCCATAGAGGAAGCTATTAACCTGAGATGGAATATTGACAACAATAATAATAATAATGATTTTCAAGACTTGTCATTTCCAGTTGAGATGGATGCTGAACTGATTGCATTCTCAGGAGCTGCTGCTGCTGCTGCTACGGATGATGAATTTACTTCAACACCCTTTGTTAACAGTAGAGGAATAGTAGGCTTAGATGCTCCTGTGGGAGTAGATTCTTGGCCACAGGCTCAGCTTGTTTAG 1035 0.401 MMLAMEEVLCELSDHEKKNEQGLPPGFRFHPTDEELITFYLASKVFKNTFFNNVKFAEVDLNRCEPWELPEMAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVFSNNSTRALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLHTHFSPSTCKEEWVICRIFHKSVEKRSSLLLQVQGHLGVNNNSNLTPQKSCLPPPPPPSFTQSHNNFPLHAFQTSFHQVTNTRNNNNQSLELLFKSQTIPKTEAMFYEQYQPQSIEEAINLRWNIDNNNNNNDFQDLSFPVEMDAELIAFSGAAAAAATDDEFTSTPFVNSRGIVGLDAPVGVDSWPQAQLV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00811 344 Pfam No apical meristem (NAM) protein 24 152 IPR003441 GO:0003677|GO:0006355
Vivi3g00811 344 FunFam NAC domain-containing protein 100-like 32 177 - -
Vivi3g00811 344 Gene3D NAC domain 32 177 IPR036093 GO:0003677|GO:0006355
Vivi3g00811 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 261 - -
Vivi3g00811 344 SUPERFAMILY NAC domain 18 173 IPR036093 GO:0003677|GO:0006355
Vivi3g00811 344 ProSiteProfiles NAC domain profile. 23 173 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00811 Vivi-Chr3 13196744 13198468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00811 1 286 NAC Transcription Factor Family AT1G76420 53.287 6.23e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi3g00811 NAM 1.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00811 - - lang:109342460 340.502