Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00805 ATGACTCGTCCTTTCAGATATCTCGACGAGCTCAACTCGTCTTCCTCCGACTCACCTGACTCCGCTGTCGTCGATTCCGACTTCGTCGTCATCCTCGCCGCTCTCCTCTGCGCTCTCATCTGCGTTCTAGGACTCATCGCCGTCTCCCGCTGCGGCTGCTTCCGTCGCTTACGTCTCCCTTCCCCCGCTCCCGCTTCTCAAACCACGCCTCCTGCTGCTGCAGCTAACAAAGGTGTCAAGAAGAAGGTTCTCCGCTCTCTTCCGAAGGTCACAGCGACGGAAGAATCCGCGGTGAAATTCTCCGACTGCGCTATTTGTCTGAGCGAATTCACCGCCGGAGATGAAATCCGAGTGCTACCTCAGTGCGGACATGGCTTCCACGTGTCATGTATCGATGCGTGGCTCAGATCTCATTCTTCTTGTCCTTCTTGCCGTCAGATTCTGGTGGTTTCTAGATGCGATAAGTGCGGCGGAATTCCCGCTCCCGCTCCGGAAACTACCGCTGTCGGCTCCAGTTCTACGGCGGCGCCGGAATCGGAAGTTAGGTTAAAGGTAAGAGAGGACGATGTGAACAGTTTCTTGCCTTAG 588 0.5578 MTRPFRYLDELNSSSSDSPDSAVVDSDFVVILAALLCALICVLGLIAVSRCGCFRRLRLPSPAPASQTTPPAAAANKGVKKKVLRSLPKVTATEESAVKFSDCAICLSEFTAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVSRCDKCGGIPAPAPETTAVGSSSTAAPESEVRLKVREDDVNSFLP 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00805 195 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Vivi3g00805 195 Pfam Ring finger domain 102 145 IPR001841 -
Vivi3g00805 195 CDD RING-H2_EL5-like 102 145 - -
Vivi3g00805 195 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 18 157 - -
Vivi3g00805 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 149 IPR013083 -
Vivi3g00805 195 SMART ring_2 103 144 IPR001841 -
Vivi3g00805 195 SUPERFAMILY RING/U-box 83 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00805 Vivi-Chr3 13109222 13109985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00805 5 195 C3H Transcription Factor Family AT1G20823 60.606 2.68e-69 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00805 - - gmx:100794614 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00805 3 13109222 13109985 Vivi3g00805 3 13109222 13109985 ECH