Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00787 ATGAATTTGTTTTTCTTGGTGTTGATGTTTACTTATCTGGGTGGAGTTTATTCAAATTCAACTATTTCAATACCCTCCATTGTAAACATTGGAGCTATCTTCACCTTTGATTCATCCATTGGTAAAGTTGCTAAACTTGCCATGGAACAAGCTGTCAAAGATGTCAACTCCAATTCCTCCATTCTTCACTCAACTCAACTTGTTCTCCATATGAAATCTTCCAATTGCAGTGGTTTTGATGGCATGATTCAAGCTTTGCGGTTCATGGAGACGGATGCAGTTGCTATATTAGGTCCACAATCTTCTGTGGTTTCTCACATAGTATCCCACGTTGCAAACGAGCTTCGTGTTCCTATGTTGTCATTTGCAGCTACAGACCCTACACTTTCGTCGCTTCAATTCCCTTTCTTTGTCAGGACAACGCTATCTGATATGTATCAGATGACTGCTGTTGCTGAAGTCATTGATTTTTATGGATGGAAAGAAGTCATTGCCATTTACGTTGATGATGATTATGGACGAAATGGTGTGTCTGCGTTAGAAGACGCTTTAGCAACAAGGCGTTGTAGAATTTCCTACAAGGTGGGAATCAAATCTGGAGCTGATGTTGATAGGAATGAAATTACCAATGTGCTTGTGAATATGGCGCTAATGCAGTCTCGAGTTATCGTTGTTCATGCCCATTCTAATTCTGGATTTATGATCTTTAAAGTGGCACATTATCTTGGAATGATGCAGGAGGGTTATGCATGGATTGCCACAGATTGGCTTTCTACTGTTCTAGATTCTGTTTCTCTTCCTTCGGAGACAATGGATACTCTGCAGGGTGTACTTGTTTTGCGGCAGCTTACGCCGGATACTGATAGGAAGAAAGCGTTTTTCTCGAGGTGGAATAAGTTAACTGATGGTTCCTTAGGGTTACATTCTTATGGCCTCCGTGCTTATGATTCTGTTTGGCTCGTTGCACAAGCTATTGATAAATTTTTCAGTCAAGGCGGGGTCATTTCATGGACCAATTACACAAGTTTGAACGATCATAAGGGAAAAGGCGGTGGTCTTAATCTTGATGCAATGAGCATATTTGACAATGGAACACTTCTGTTGAACAACATATTGAGGAGTGATTTTGTTGGACTATCAGGTCCAATGAAATTTGATTCAGATAAATCTCTTGTTCGTCCTGCCTATGACGTCGTTAATGTTATTGGAAATGGTGTTCGTCGAGTTGGATACTGGTCTAACTATTCTGGTCTGTCGGTTGTATCTCCCGAGACATTGTACGCTAATCCACCTAATAGATCAAGTGCAAACCAGCACCTTCACTCAGTGATATGGCCTGGAGAAACAATATCCAAGCCCCGTGGATGGGTCTTCCCCAGCAACGGGAAACAATTGAGAATTGGCGTGCCTATCCGAGCCAGTTATCGTGAATTCGTGTCGCCGGTGAAGGGAACTGACATGTTTAAAGGGTTCTGTATTGATGTATTTGTGGCAGCTGTAAACTTGTTACCGTACGCCGTTCCTTACCGGTTTGTGCCATTCGGAGACGGCCTCAAAAATCCAAGCTACACAGAATTTGTCAACTTAATAACGACTGGTTATTTTGACGGGGCTATTGGCGACATTGCTATTGTTACAAATCGAACAAGGATTGTAGATTTTACACAGCCATATACTGCATCCGGACTTGTTGTGGTTGCCCCTTTTAAGAAGATCAATTCCGGCGGTTGGGCTTTCCTTCAGCCGTTCACTCCTCTTATGTGGATTGTGACTGCTTGTTCCTTCTTTTTTGTCGGGATAGTTGTATGGATTCTTGAACACAGGATAAACGACGAGTTCAGGGGTTCACCTAAACAACAACTAATAACCATATTATGGTTTAGCTTGTCGACTCTCTTTTTTTCCCACAGAGAGAATACAATGAGTACTCTTGGCCGTGGCGTGATACTCATATGGTTGTTTGTGGTTTTGATCATTAATTCCAGCTACACTGCTAGTTTAACGTCCATACTCACGGTGCAGCAGTTATCTTCACCTATCAGCGGCATAGATAGCTTAAAAGCAAGTGATGAACCTATAGGGTTCCAAGTCGGTTCATTTGCGGAACGTTACTTGATTGAAGATATTGGAATATCCAAATCTAGACTCGTAGCTCTTGGATCGCCGGAGGCATATGCTAAGGCGCTCCAGCTTGGTCCTAATAAAGGAGGTGTTGCTGCTATTATAGACGAACGACCATACGTCGAAATATTCTTATCAACGCAATGCACATTCAGGATTGTAGGTCAGGAGTTCACCAGAAGTGGCTGGGGTTTTGCATTCCCTCGGGACTCCCCTTTGGCGGTGGATTTATCAACTGCCATTCTACAACTTTCTGAAACCGGTGATCTGCAGCGGATTCATGATAAGTGGATTACGCGAAGTACTTGTAGTTTAGATAATACTGAAATTGATTCAGATCGGCTTCAGCTCAAAAGCTTCTGGGGTCTCTTTATCATTTGCGGGATAGCTTGCGGTATAGCTCTCATTATATATTTTTTGCAGATTATGTTAGTGTTATGTCGTTCTTCACCTTCTGAACCCGCGTCTAATGTTGGGCGAATTCAAAGATTTCTTTCACTCGTTGACGAGAAGAAAGGTCCGTCGAGGAGTGAAAGAAGAAAGAGGAACGGAGATGAAATTTCGCCCGAAGATCAATTGGGAAGGCAACCAAAGAGAATACAACTTACCCTTTGA 2736 0.424 MNLFFLVLMFTYLGGVYSNSTISIPSIVNIGAIFTFDSSIGKVAKLAMEQAVKDVNSNSSILHSTQLVLHMKSSNCSGFDGMIQALRFMETDAVAILGPQSSVVSHIVSHVANELRVPMLSFAATDPTLSSLQFPFFVRTTLSDMYQMTAVAEVIDFYGWKEVIAIYVDDDYGRNGVSALEDALATRRCRISYKVGIKSGADVDRNEITNVLVNMALMQSRVIVVHAHSNSGFMIFKVAHYLGMMQEGYAWIATDWLSTVLDSVSLPSETMDTLQGVLVLRQLTPDTDRKKAFFSRWNKLTDGSLGLHSYGLRAYDSVWLVAQAIDKFFSQGGVISWTNYTSLNDHKGKGGGLNLDAMSIFDNGTLLLNNILRSDFVGLSGPMKFDSDKSLVRPAYDVVNVIGNGVRRVGYWSNYSGLSVVSPETLYANPPNRSSANQHLHSVIWPGETISKPRGWVFPSNGKQLRIGVPIRASYREFVSPVKGTDMFKGFCIDVFVAAVNLLPYAVPYRFVPFGDGLKNPSYTEFVNLITTGYFDGAIGDIAIVTNRTRIVDFTQPYTASGLVVVAPFKKINSGGWAFLQPFTPLMWIVTACSFFFVGIVVWILEHRINDEFRGSPKQQLITILWFSLSTLFFSHRENTMSTLGRGVILIWLFVVLIINSSYTASLTSILTVQQLSSPISGIDSLKASDEPIGFQVGSFAERYLIEDIGISKSRLVALGSPEAYAKALQLGPNKGGVAAIIDERPYVEIFLSTQCTFRIVGQEFTRSGWGFAFPRDSPLAVDLSTAILQLSETGDLQRIHDKWITRSTCSLDNTEIDSDRLQLKSFWGLFIICGIACGIALIIYFLQIMLVLCRSSPSEPASNVGRIQRFLSLVDEKKGPSRSERRKRNGDEISPEDQLGRQPKRIQLTL 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00787 911 Pfam Ligand-gated ion channel 806 838 IPR001320 GO:0015276|GO:0016020
Vivi3g00787 911 PIRSF IGluLR_plant 1 909 IPR017103 -
Vivi3g00787 911 Gene3D - 143 418 - -
Vivi3g00787 911 SUPERFAMILY Periplasmic binding protein-like I 24 457 IPR028082 -
Vivi3g00787 911 FunFam Glutamate receptor 576 706 - -
Vivi3g00787 911 MobiDBLite consensus disorder prediction 877 900 - -
Vivi3g00787 911 Gene3D - 753 812 - -
Vivi3g00787 911 Gene3D - 574 701 - -
Vivi3g00787 911 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 28 852 IPR015683 -
Vivi3g00787 911 FunFam Glutamate receptor 702 809 - -
Vivi3g00787 911 Pfam Bacterial extracellular solute-binding proteins, family 3 487 805 IPR001638 -
Vivi3g00787 911 CDD GluR_Plant 463 805 - -
Vivi3g00787 911 PRINTS Metabotropic glutamate GPCR signature 128 147 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vivi3g00787 911 PRINTS Metabotropic glutamate GPCR signature 163 180 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vivi3g00787 911 PRINTS Metabotropic glutamate GPCR signature 147 163 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vivi3g00787 911 PRINTS Metabotropic glutamate GPCR signature 96 122 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vivi3g00787 911 Gene3D - 46 393 - -
Vivi3g00787 911 SMART GluR_14 466 807 IPR001320 GO:0015276|GO:0016020
Vivi3g00787 911 CDD PBP1_GABAb_receptor_plant 29 421 IPR044440 -
Vivi3g00787 911 MobiDBLite consensus disorder prediction 877 911 - -
Vivi3g00787 911 FunFam Glutamate receptor 143 294 - -
Vivi3g00787 911 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 314 326 - -
Vivi3g00787 911 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 41 57 - -
Vivi3g00787 911 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 101 129 - -
Vivi3g00787 911 FunFam Glutamate receptor 460 575 - -
Vivi3g00787 911 SUPERFAMILY Periplasmic binding protein-like II 441 807 - -
Vivi3g00787 911 Gene3D - 457 573 - -
Vivi3g00787 911 Pfam Receptor family ligand binding region 45 403 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00787 Vivi-Chr3 12943058 12946845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00787 3 892 Ion Channels AT1G42540 63.536 0.0 1215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00787 K05387 - gmx:102661260 1456.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00787 3 12943058 12946845 Vivi3g00787 3 12943058 12946845 ECH