Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00774 ATGGATGCAGAAAACGAGAGTATCTCAAAATCGAATGCCATTATCGGAGAAAGCCTCTACGTAAAAGTGATGACCGACGAACAACTGGAGCTTCTCCGGCAACAGATTTCCATCTACACAACCATCTCCGATCAGCTCATTCAGATGCACAAATCCATCACCACACAACACGACCTCGCTGGACTGAGACTAGGTAATCTGTACTGTGATCCACTCATGGCGTGCTCTGGAGTTGGACACAAGCTCTCATCACGGCAGCGATGGACTCCGACTCCTCTCCAGCTTCAGATACTCGAACGGATATTCGATGAAGGAAATGGAACTCCTACGAAACAGAAGATTAAAGATATAGCTGTTGAGCTTGGACAGCATGGGCAGATATCGGAGACTAATGTTTATAACTGGTTTCAGAATAGAAGAGCTCGGTCGAAGCGGAAGCAATCGGTTCATGCAACGAATCAGGTTGAGGCGGAGGTGGAGACGGAAGATGAGTCGCCGAAAGAGAAAGTAATGCGCGGAGGAAGCGAGCATGTTCAATCGTTTGAGAATTTATCGCCGGTTAGGGTAAAGGATATGTATATTCAGAGTCCTGATATAGGATTTGAGCAGTTGTTGGGTAAAATTGAAGTTGCAGGCTGTTATAGTTCTTACATCCTTTGA 660 0.4591 MDAENESISKSNAIIGESLYVKVMTDEQLELLRQQISIYTTISDQLIQMHKSITTQHDLAGLRLGNLYCDPLMACSGVGHKLSSRQRWTPTPLQLQILERIFDEGNGTPTKQKIKDIAVELGQHGQISETNVYNWFQNRRARSKRKQSVHATNQVEAEVETEDESPKEKVMRGGSEHVQSFENLSPVRVKDMYIQSPDIGFEQLLGKIEVAGCYSSYIL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00774 219 SMART HOX_1 83 150 IPR001356 GO:0003677
Vivi3g00774 219 MobiDBLite consensus disorder prediction 146 176 - -
Vivi3g00774 219 Pfam Homeodomain 85 145 IPR001356 GO:0003677
Vivi3g00774 219 MobiDBLite consensus disorder prediction 156 175 - -
Vivi3g00774 219 SUPERFAMILY Homeodomain-like 78 148 IPR009057 -
Vivi3g00774 219 Gene3D - 86 152 - -
Vivi3g00774 219 PANTHER WUSCHEL-RELATED HOMEOBOX 13 12 202 IPR044559 GO:0003700
Vivi3g00774 219 CDD homeodomain 85 147 IPR001356 GO:0003677
Vivi3g00774 219 ProSiteProfiles 'Homeobox' domain profile. 81 146 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00774 Vivi-Chr3 12791044 12792791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00774 19 217 Wox Gene Family AT4G35550 53.070 1.44e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vivi3g00774 Homeodomain 1.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00774 - - var:108342525 319.701