Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00766 ATGAAAGGAGGAAAGTCCAAGGGTGAATCGAAGAAAGCTGAAACGAAGCTTGCGGTGAATAAGAAGGGTGCTCCCGCCACCAAGGGCGGAAAGAAGCCAGCCAAGGGAAAAGAGCCAAAGGACCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGACTTTAGGAAGCAGTTCAAAAAGGATAACCCTGACAACAAAGCTGTGTCTGCAGTGGGTAAAGCAGCTGGAGCAAAATGGAAGTCATTGACTGATGCTGAGAAAGCCCCATATGCTGCTAAGGCAGAGAAAAGGAAGGCTGAATATGAGAAGAACATGAAGTCCTATACCAAGAAACAGGCCGAGGGCCCAGCTGCTGTTGAAGAAGAAGTAGAATCTGAGAAATCAGAATCTGAGGTGCATGATGATAATGATGATGAGGAAGAAAGTGAAGAGGAGGATGATGACGAGTAG 465 0.4688 MKGGKSKGESKKAETKLAVNKKGAPATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMEDFRKQFKKDNPDNKAVSAVGKAAGAKWKSLTDAEKAPYAAKAEKRKAEYEKNMKSYTKKQAEGPAAVEEEVESEKSESEVHDDNDDEEESEEEDDDE 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00766 154 MobiDBLite consensus disorder prediction 94 128 - -
Vivi3g00766 154 SMART hmgende2 44 115 IPR009071 -
Vivi3g00766 154 CDD HMG-box_AtHMGB1-like 46 106 - -
Vivi3g00766 154 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 149 IPR031061 -
Vivi3g00766 154 Coils Coil 96 116 - -
Vivi3g00766 154 SUPERFAMILY HMG-box 32 115 IPR036910 -
Vivi3g00766 154 MobiDBLite consensus disorder prediction 1 51 - -
Vivi3g00766 154 Gene3D High mobility group box domain 29 129 IPR036910 -
Vivi3g00766 154 MobiDBLite consensus disorder prediction 31 45 - -
Vivi3g00766 154 MobiDBLite consensus disorder prediction 64 154 - -
Vivi3g00766 154 MobiDBLite consensus disorder prediction 1 18 - -
Vivi3g00766 154 Pfam HMG (high mobility group) box 45 113 IPR009071 -
Vivi3g00766 154 MobiDBLite consensus disorder prediction 129 154 - -
Vivi3g00766 154 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00766 Vivi-Chr3 12766593 12768496 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vivi3g00766 HMG_box 3.2e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00766 K25507 - lang:109352139 154.066