Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00758 ATGAGTTGTTTTTCTTGCTTTGTTTCTCGTCGGAAAAAAGATGGTAGCAGAGTTGAAGTTGATAATGGTTCTCGATCTGCTACTACTCCAGGGAATGGAGGAACGAGTTCATCAGAGGGTGAATGGAAGAGAGAATGTTCGGAGGGAAAGGGGAAGAGTGTGATGAGTAGCAAAAGTAGAACTGCTGCGGCTAGTTTTGGTTTTCGAGAGCTTGCGACAGCGACTAGGGGTTTTAATGAAGCGAATTTGATTGGGGAAGGAGGTTTTGGAAAAGTTTTCAAGGGTCGGCTTTCAACTGGCGAGCTTGTTGCGGTTAAACAATTAAGTCATGATGGTCGTCAAGGCTTTCAGGAGTTTGTGACTGAAGTTCTTATGCTAAGTCTGCTGCATCATTCTAATCTTGTTAAGTTGATTGGCTATTGCACGGATGGAGATCAAAGGCTTTTGGTTTATGAATACATGCCTATGGGGTGTCTTGAAGATCATCTTTTTGATGTTCCACAAGACAAAGAACCTCTAAGTTGGAGTTCTCGAATGAAGATTGCTGTTGGAGCAGCTCGGGGCCTTGAGTATCTCCATTGCAAAGCAGATCCTCCTGTTATCTATCGAGACTTGAAATCTGCAAACATCTTATTAGACAATGACTTCAGCCCAAAACTGTCAGATTTCGGGCTTGCTAAACTAGGACCTGTTGGAGACAATACTCATGTTTCAACCAGAGTAATGGGTACATATGGCTACTGTGCGCCAGAATATGCGATGAGTGGCAAATTAACTCTCAAATCTGATATCTACAGCTTTGGCGTGGTTTTGTTGGAGTTGATCACTGGACGCAGAGCAATAGATTCTACTAAAAAACCAGGAGAGCAAAACTTAGTTTCATGGTCTCGCCCATATTTTAGTGACAGGAGAAAGTTTGTACATATGGCTGACCCTCTTCTGCAAGGACAATTCCCCGTCCGATGTTTGCATCAAGCAATTGCTATTACTGCTATGTGTCTCCAGGAGCAACCAAAATTTCGTCCACTCATCGGTGATATTGTTGTTGCACTAGAATACCTAGCTTCTCAGAGTATTGAAGCACATTGA 1089 0.4288 MSCFSCFVSRRKKDGSRVEVDNGSRSATTPGNGGTSSSEGEWKRECSEGKGKSVMSSKSRTAAASFGFRELATATRGFNEANLIGEGGFGKVFKGRLSTGELVAVKQLSHDGRQGFQEFVTEVLMLSLLHHSNLVKLIGYCTDGDQRLLVYEYMPMGCLEDHLFDVPQDKEPLSWSSRMKIAVGAARGLEYLHCKADPPVIYRDLKSANILLDNDFSPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDSTKKPGEQNLVSWSRPYFSDRRKFVHMADPLLQGQFPVRCLHQAIAITAMCLQEQPKFRPLIGDIVVALEYLASQSIEAH 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00758 362 Gene3D Transferase(Phosphotransferase) domain 1 154 361 - -
Vivi3g00758 362 ProSiteProfiles Protein kinase domain profile. 78 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00758 362 MobiDBLite consensus disorder prediction 21 40 - -
Vivi3g00758 362 FunFam Serine/threonine-protein kinase PBS1 154 362 - -
Vivi3g00758 362 SUPERFAMILY Protein kinase-like (PK-like) 57 352 IPR011009 -
Vivi3g00758 362 CDD STKc_IRAK 84 352 - -
Vivi3g00758 362 PANTHER OS07G0668900 PROTEIN 24 360 - -
Vivi3g00758 362 MobiDBLite consensus disorder prediction 12 54 - -
Vivi3g00758 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Vivi3g00758 362 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Vivi3g00758 362 SMART serkin_6 78 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00758 362 FunFam probable serine/threonine-protein kinase RLCKVII 50 153 - -
Vivi3g00758 362 Pfam Protein kinase domain 79 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00758 362 Gene3D Phosphorylase Kinase; domain 1 50 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00758 Vivi-Chr3 12627364 12630690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00758 1 356 Glycoside Hydrolase AT3G07070 58.311 5.41e-151 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vivi3g00758 Pkinase 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00758 - - gmx:100796595 579.326