Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00756 ATGGGAAACTGTTTGGCAAATCCAAATCATGACAGTAAGAAAAAGAGAAAGCAACAAAACAATACTTCTTCTGCAGGTGCAGGTGGTGATCAGAGAAGTGTTGGTGTTGGAGCGGCGAATAAGGAAAAATATGGTGGAAAAATCGTGACGCCCAATCTGAAAATGTTTACATTAGATGAGTTGAAAAGTGTGACAAGAAACTTCAGACCAGACACAGTACTAGGTGAAGGTGGTTTTGGACGTGTTTTCAAAGGATGGATCGATAAAAATACTTACAAACCATCTAAAGTCGGTGTTGGAATTCCAGTTGCTGTTAAGAAATCGAGCGCGGATAGTCTTCAAGGTTTACAAGAATGGCAGAGTGAAGTGAAATTTTTGGGGAAATTCTCGCATCCGAATCTTGTTAAACTACTTGGATTTTGCTGGGAGGAAGATCAGTTTCTGCTTGTGTACGAGTACATGCAAAAGGGAAGCTTGGAAAGTCACATATTCAGAAGTCCAGAACCACTTTCTTGGGATATAAGGATGAAGATAGCTATAGGAGCTGCTAGAGGATTGGATTTTTTGCATACTTCAGAGAAGTCTGTTATTTATAGGGACTTTAAATCCTCTAACATTTTGCTTGATGGGGATTTCAATGCAAAGCTGTCTGACTTTGGGTTGGCAAAGCTTGGGCCAGTCAATGGTAGGTCTCATGTTACCACCAGAATCATGGGTACCTATGGCTATGCAGCACCTGAGTACATGGCTACAGGTCATCTTTATGTGAAAAGCGATGTGTATGGATTTGGTGTTGTGCTTCTAGAAATGTTAACAGGCTTAATAGCACTTGACACAAATAGGCCAACAAATGAGATGAATTTGGTGGATTACACAAAGGGATCTCTACATGACAAAAAGAAACTCAAAAAGATAATGGATCAAAGATTGGATCAACAATATCCATTAGCAGCAGCATTTCTTATAGCTCAAGTTATTTTCCAATGCTTAGAAGCTGACCCTAAAAATAGGCCTTCTATGGAGCAAGTATTGGAAACTTTAGAAAAGGCTCAAACAATTAAGTACAAGCCCAAAGTGAAAAAATCGAGAAGTGCACAATCTAAAAATATGAGACCAAATGAGCACTCTACTGATAAGCAATAA 1143 0.3911 MGNCLANPNHDSKKKRKQQNNTSSAGAGGDQRSVGVGAANKEKYGGKIVTPNLKMFTLDELKSVTRNFRPDTVLGEGGFGRVFKGWIDKNTYKPSKVGVGIPVAVKKSSADSLQGLQEWQSEVKFLGKFSHPNLVKLLGFCWEEDQFLLVYEYMQKGSLESHIFRSPEPLSWDIRMKIAIGAARGLDFLHTSEKSVIYRDFKSSNILLDGDFNAKLSDFGLAKLGPVNGRSHVTTRIMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEMLTGLIALDTNRPTNEMNLVDYTKGSLHDKKKLKKIMDQRLDQQYPLAAAFLIAQVIFQCLEADPKNRPSMEQVLETLEKAQTIKYKPKVKKSRSAQSKNMRPNEHSTDKQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00756 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vivi3g00756 380 MobiDBLite consensus disorder prediction 355 380 - -
Vivi3g00756 380 PIRSF TyrPK_CSF1-R 67 171 - -
Vivi3g00756 380 PIRSF TyrPK_CSF1-R 165 380 - -
Vivi3g00756 380 CDD STKc_IRAK 74 349 - -
Vivi3g00756 380 Gene3D Transferase(Phosphotransferase) domain 1 154 374 - -
Vivi3g00756 380 SUPERFAMILY Protein kinase-like (PK-like) 53 361 IPR011009 -
Vivi3g00756 380 Pfam Protein tyrosine and serine/threonine kinase 72 347 IPR001245 GO:0004672|GO:0006468
Vivi3g00756 380 ProSiteProfiles Protein kinase domain profile. 68 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00756 380 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 154 361 - -
Vivi3g00756 380 PANTHER OS01G0588500 PROTEIN-RELATED 13 351 - -
Vivi3g00756 380 FunFam Serine/threonine-protein kinase BIK1 37 153 - -
Vivi3g00756 380 ProSitePatterns Protein kinases ATP-binding region signature. 74 107 IPR017441 GO:0005524
Vivi3g00756 380 Gene3D Phosphorylase Kinase; domain 1 52 153 - -
Vivi3g00756 380 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00756 Vivi-Chr3 12586544 12589458 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00756 36 347 Glycoside Hydrolase AT3G07070 47.170 2.13e-93 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi3g00756 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00756 - - aprc:113865973 555.058