Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00747 ATGGGAAACTGTTTGGCAAATCCAAATCATGACAGTAAGAAAAAGAGAAAGCAACAAAACAATAATTCTTCTGCAGGTGCAGATGGTGATGAGAGAAGGGTTGGTGTTGGAGCGGCGAATAAGGAAAAATATGGTGGAAAAATCGTGACGCCGAATCTGAAAATGTTTACATTAGATGAGTTGAAAAGTGTGACTAGAAACTTCAGACCAGACACAGTACTAGGTGAAGGTGGTTTTGGACGTGTTTTCAAAGGATGGATTGACAAAAACACTTACAAACCATCGAAAGTTGGTGTTGGAATTCCTGTCGCTGTTAAGAAATCCAGTGCCGATAGTCTCCAAGGTTTACAAGAATGGCAGAGTGAAGTGAAATTTTTGGGGAAATTCTCGCATCCGAATCTTGTTAAACTGCTTGGATTTTGCTGGGAGGAAGATCAGTTTCTGCTTGTGTATGAGTACATGCAAAAGGGAAGCTTGGAAAGTCACATATTCAGAAGTCCAGAACCACTTTCTTGGGATATAAGGATGAAGATAGCTATAGGAGCTGCTAGAGGATTGGATTTTTTGCATACTTCAGAAAAGTCTGTTATTTATAGGGACTTTAAATCCTCCAACATTTTGCTTGATGGGGATTTCAATGCAAAGTTGTCTGACTTTGGGTTGGCAAAGCTTGGGCCAGTCAATGGTAGATCTCATGTTACTACCAGAATTATGGGAACTTATGGTTATGCAGCACCTGAGTACATGGCTACAGGTCATCTTTATGTGAAAAGCGATGTGTATGGATTTGGTGTTGTTCTTCTAGAAATGTTAACAGGCTTAATAGCACTTGACACAAATAGGCCAACAAATGAGATGAATTTGGTGGATTACACAAAGGGATCTCTACATGACAAAAAGAAACTCAAAAAGATAATGGATCAAAGATTGGATCAACAATATCCATTAGCAGCAGCATTTCTAATAGCTCAAGTTATTCTCCAATGTTTAGAAGCTGACCCTAAAAATAGGCCTTCTATGGAGCAAGTATTGGAAACTTTAGAAAAGGCTCAAACAATTAAGTACAAGCCCAAAGTGAAAAAATCGAGAAGTGCACAATCGAAAAATATGAGACCAAATGAGCACTCTACTGATAAGCAATAA 1143 0.3867 MGNCLANPNHDSKKKRKQQNNNSSAGADGDERRVGVGAANKEKYGGKIVTPNLKMFTLDELKSVTRNFRPDTVLGEGGFGRVFKGWIDKNTYKPSKVGVGIPVAVKKSSADSLQGLQEWQSEVKFLGKFSHPNLVKLLGFCWEEDQFLLVYEYMQKGSLESHIFRSPEPLSWDIRMKIAIGAARGLDFLHTSEKSVIYRDFKSSNILLDGDFNAKLSDFGLAKLGPVNGRSHVTTRIMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEMLTGLIALDTNRPTNEMNLVDYTKGSLHDKKKLKKIMDQRLDQQYPLAAAFLIAQVILQCLEADPKNRPSMEQVLETLEKAQTIKYKPKVKKSRSAQSKNMRPNEHSTDKQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00747 380 Pfam Protein tyrosine and serine/threonine kinase 72 347 IPR001245 GO:0004672|GO:0006468
Vivi3g00747 380 Gene3D Transferase(Phosphotransferase) domain 1 154 374 - -
Vivi3g00747 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vivi3g00747 380 MobiDBLite consensus disorder prediction 355 380 - -
Vivi3g00747 380 CDD STKc_IRAK 74 349 - -
Vivi3g00747 380 PIRSF TyrPK_CSF1-R 67 171 - -
Vivi3g00747 380 PIRSF TyrPK_CSF1-R 165 380 - -
Vivi3g00747 380 PANTHER OS01G0588500 PROTEIN-RELATED 13 351 - -
Vivi3g00747 380 ProSiteProfiles Protein kinase domain profile. 68 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00747 380 MobiDBLite consensus disorder prediction 1 34 - -
Vivi3g00747 380 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 154 361 - -
Vivi3g00747 380 SUPERFAMILY Protein kinase-like (PK-like) 53 361 IPR011009 -
Vivi3g00747 380 FunFam Serine/threonine-protein kinase BIK1 37 153 - -
Vivi3g00747 380 ProSitePatterns Protein kinases ATP-binding region signature. 74 107 IPR017441 GO:0005524
Vivi3g00747 380 Gene3D Phosphorylase Kinase; domain 1 52 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00747 Vivi-Chr3 12532726 12535140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00747 3 347 Glycoside Hydrolase AT3G07070 44.321 1.07e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi3g00747 PK_Tyr_Ser-Thr 5.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00747 - - aprc:113865973 552.362