Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00746 ATGGGAAACTGTTTGGCAAATCCAAATCATGACAGTAAGAAAAAGAGAAAGCAACAAAACAATAATTCTTCTGCAGATGGTGATGAGAGAAGGGTTGGTGTTGGAGCGGCGAATAAGGAAAAATATGGTGGAAAAATCGTGACGCCGAATCTGAAAATGTTTACATTAGATGAGTTGAAAAGTGTGACTAGAAACTTCAGACCAGACACAGTACTAGGTGAAGGTGGTTTTGGACGTGTTTTCAAAGGATGGATTGACAAAAACACTTACAAACCATCGAAAGTTGGTGTTGGAATTCCTGTCGCTGTTAAGAAATCCAGTGCCGATAGTCTCCAAGGTTTACAAGAATGGCAGAGTGAAGTGAAATTTTTGGGGAAATTCTCGCATCCGAATCTTGTTAAACTGCTTGGATTTTGCTGGGAGGAAGATCAGTTTCTGCTTGTGTATGAGTACATGCAAAAGGGAAGCTTGGAAAGTCACATATTCAGAAGTCCAGAACCACTTTCTTGGGATATAAGGATGAAGATAGCTATAGGAGCTGCTAGAGGATTGGATTTTTTGCATACTTCAGAAAAGTCTGTTATTTATAGGGACTTTAAATCCTCCAACATTTTGCTTGATGGGGATTTCAATGCAAAGTTGTCTGACTTTGGGTTGGCAAAGCTTGGGCCAGTCAATGGTAGATCTCATGTTACTACCAGAATTATGGGAACTTATGGTTATGCAGCACCTGAGTACATGGCTACAGGTCATCTTTATGTGAAAAGCGATGTGTATGGATTTGGTGTTGTTCTTCTAGAAATGTTAACAGGCTTAATAGCACTTGACACAAATAGGCCAACAAATGAGATGAATTTGGTGGATTACACAAAGGGATCTCTACATGACAAAAAGAAACTCAAAAAGATAATGGATCAAAGATTGGATCAACAATATCCATTAGCAGCAGCATTTCTAATAGCTCAAGTTATTCTCCAATGTTTAGAAGCTGACCCTAAAAATAGGCCTTCTATGGAGCAAGTATTGGAAACTTTAGAAAAGGCTCAAACAATTAAGTACAAGCCCAAAGTGAAAAAATCGAGAAGTGCACAATCGAAAAATATGAGACCAAATGAGCACTCTACTGATAAGCAATAA 1137 0.3852 MGNCLANPNHDSKKKRKQQNNNSSADGDERRVGVGAANKEKYGGKIVTPNLKMFTLDELKSVTRNFRPDTVLGEGGFGRVFKGWIDKNTYKPSKVGVGIPVAVKKSSADSLQGLQEWQSEVKFLGKFSHPNLVKLLGFCWEEDQFLLVYEYMQKGSLESHIFRSPEPLSWDIRMKIAIGAARGLDFLHTSEKSVIYRDFKSSNILLDGDFNAKLSDFGLAKLGPVNGRSHVTTRIMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEMLTGLIALDTNRPTNEMNLVDYTKGSLHDKKKLKKIMDQRLDQQYPLAAAFLIAQVILQCLEADPKNRPSMEQVLETLEKAQTIKYKPKVKKSRSAQSKNMRPNEHSTDKQ 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00746 378 ProSiteProfiles Protein kinase domain profile. 66 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00746 378 Pfam Protein tyrosine and serine/threonine kinase 70 345 IPR001245 GO:0004672|GO:0006468
Vivi3g00746 378 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 152 359 - -
Vivi3g00746 378 MobiDBLite consensus disorder prediction 353 378 - -
Vivi3g00746 378 PIRSF TyrPK_CSF1-R 163 378 - -
Vivi3g00746 378 PIRSF TyrPK_CSF1-R 65 169 - -
Vivi3g00746 378 Gene3D Phosphorylase Kinase; domain 1 50 151 - -
Vivi3g00746 378 PANTHER OS01G0588500 PROTEIN-RELATED 14 349 - -
Vivi3g00746 378 FunFam Serine/threonine-protein kinase BIK1 35 151 - -
Vivi3g00746 378 ProSitePatterns Protein kinases ATP-binding region signature. 72 105 IPR017441 GO:0005524
Vivi3g00746 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vivi3g00746 378 CDD STKc_IRAK 72 347 - -
Vivi3g00746 378 SUPERFAMILY Protein kinase-like (PK-like) 51 359 IPR011009 -
Vivi3g00746 378 MobiDBLite consensus disorder prediction 9 24 - -
Vivi3g00746 378 Gene3D Transferase(Phosphotransferase) domain 1 152 372 - -
Vivi3g00746 378 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00746 Vivi-Chr3 12532726 12535140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00746 10 345 Glycoside Hydrolase AT3G07070 44.193 1.52e-93 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi3g00746 PK_Tyr_Ser-Thr 5.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00746 - - aprc:113865973 552.362