Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00744 ATGGGAGATGGTGCTGCTGTTACATCATCTGCAACCATGATGGAAGCACCGCCGCAAGATGTAAATTCAATGGATTTTGATTATATGAGTGAGCTTTTGTTAGATGGTTGTTGGTTGGAAGCTTCTGCGGATGGATCTGAGTTCTTGCTGCAAAGTTCTCCCTTTTCAAATCCAATCTTTGACCCGTCGTTTTCTTGGCCTGTCTTGGAGAATAACGAGCCACCCCGCATTGAGGATCGGAATGAATTACAAGATGATCCTCTTGGTACTGAACAAGAAAATAGGATTATGGTTAATAATGTTGGTTGTAGTGACCGGCAAGAGTGTGAGTTTGAGACGCGTTTGGGTGAAGGGGTTAGTAGATTGTGGATTCCGCCGACGCCTAATCAAGGACGTGGTGGATCTTCCATAACGGAGAAGCTGATACGAGCTCTCAGGTGGATCAAGGATTTCAATAGGAACAAGGATATGCTTATACAAATATGGGTGCCGGTTAATAGAGGGGATGATAGGCCGATTCTGAGGGCTAATGATCTTCCTTTTTCACTTGAATCAAGTTCTTTAAACCTAGCAAAGTACCGAGAAATTTCAGTGAGATATCAGTTTTCCGCAGAGGAGGAGGACTCGAAGGAGTTGGTGGCAGGTTTGCCTGGTCGAGTTTATAGGGATAAGATTCCTGAGTGGACACCTGATGTTCGATTCTTCAGGAGTGAAGAGTATCCGCGAGTTGACCATGCTCAAGAGTGTGATATACACGGAACATTAGCAGTTCCAGTCTTTGAACAAGGGAGTCGGACATGTTTGGGCGTTATTGAAGTGGTGATGACTACCCAGCAGAGCAACTATGGCCGTGAACTTGAGACAGTTTGCAAAGCGCTTGAGGTTGTTGATCTCAGAAGCTCTGGACATTCAAGCCTCCAGAATGTGAAGGCACGTGACAAGTCCTACGAAACCGCACTACCCGAGATTCAAGAGGTTTTGAGATCTGCATGTGAAATGCACAAATTACCTTTGGCTCAGACTTGGGTTTCTTGCATCCAACAGGGAAAAGATGGTTGCCGGCATTCTGATGATAATTATGCACGCTGTATCTCTCCAGTGGAACATGCTTGCTATGTTGGTGATTCCTCGGCCAGGTTTTTTCACGAGGCTTGCATGGAGCATCACTTGTTAATAGGCCAAGGTGTTGCCGGGGGTGCTTTTATGACAAACCAACCGTGCTTCTCGGCTGACATTACTTCTTTAAGCAAGACCGATTATCCACTGTCTCATCATGCCAGGTTGTTTGGGTTGCGGGCTGCAGTTGCCATACGACTCCGAAGCATCTATAGTACTTTGGATGACTATGTTCTTGAGTTCTTCTTGCCTGTAGATTGCAACGACAGTGAAGAACAGAAAAAGATGCTCACATCACTGTCCATGATTATTCAAAGGGTTTGCCGCAGCTTGCGAGTTATAACCAATAAGGAATTGGAGAAAAATAACTTATCACTTAATGAAGTAATGGCCATTGCCGCGGATAGTGGATTCGCTAGGAATGCAATTAGGCCGGACCTCCAAGACAGGAGAACAGCTGCCTCATTGGGTAGCGAAGAAAAGTTTATCGAAACAATGAGTAAAAAATTCTCAGAACAAAGGCGGCGACAAGAAAATCTTATCTTAAAAGAAGATGCTGACCATGGTAGGGAGTGTTCTCCTTCTGTTCAGGGTAGCTTCTTGTCAAGTTTGGGAGTAAATAAAACAGGAGAGAAAAGACGGGTCAAGGCGGAGAAAACTATCACTCTTCAAGTCCTGAGGCAATATTTCGCCGGAAGTCTAAAAGATGCTGCAAAGAATATTGGCGTCTGTACTACAACCCTGAAAAGGATATGCCGGCAACATGGTATTAAGCGTTGGCCTTCTCGGAAGATAAAAAAGGTTGGTCACTCCTTGCAGAAACTTCAACTTGTCATTGACTCGGTTCAAGGTGCCTCTGGTTCATTTCAATTTGATTCCTTCTATTCAAAATTCTCGGATCTATCGTCTCCAAACTTATCAGGAACCACCCTGATCTCAACTCTGAATCAAATCGATAATCCAGTCTCATTAAGCATACAGCCCGATCCCAACACGTTGAGTCCAGAAGGTGCGTCGAAATCACCTTCGTCTTCATGTAGTCAAAGTTCCTTTTCAAGCCATTCCTGTTCCAGCATGTCCGAGCAACAGCACCATACAAGCAATGTTGCTGCTGGTAGTATCAAAGATCTATCCGTCGGTGAAGATTCCGTTGACGTGTTGAAGAGAATCCGAAGTGAAACAGAACTTAAAAGTCTGATTCAAGATAATAAAACAAAACTCATACCAAGATCACAAAGCCAGGAAACACTTGGCGAACACCCGAAAACCGAGTATCTCCAACCCTTTATAAAAACCGCTCACAAAGCATCTCAAAAGGAAGATGCTCACAAAGTAAAAATTACATTCGGAGACGAGAAAGCCCGGTTTAGGTTGCCAAAGAACTGGAGTTACGAAGATCTCGTGCAGGAAGTTGCTAGGAGATTTAATGTAAGTGACATGAGCAAATTCGATATCAAATATTTGGACGATGATTATGAATGGGTATTACTAACTTGTGATGCAGATTTGGAGGAGTGCATTGATGTTTGTCAATCTTCTGAGGCTAGTACTATCAAACTTTGTCTGCAAACCTCAAGTAATTTTATCAGGAGTTCTTTAGAATTTAGATAG 2727 0.4364 MGDGAAVTSSATMMEAPPQDVNSMDFDYMSELLLDGCWLEASADGSEFLLQSSPFSNPIFDPSFSWPVLENNEPPRIEDRNELQDDPLGTEQENRIMVNNVGCSDRQECEFETRLGEGVSRLWIPPTPNQGRGGSSITEKLIRALRWIKDFNRNKDMLIQIWVPVNRGDDRPILRANDLPFSLESSSLNLAKYREISVRYQFSAEEEDSKELVAGLPGRVYRDKIPEWTPDVRFFRSEEYPRVDHAQECDIHGTLAVPVFEQGSRTCLGVIEVVMTTQQSNYGRELETVCKALEVVDLRSSGHSSLQNVKARDKSYETALPEIQEVLRSACEMHKLPLAQTWVSCIQQGKDGCRHSDDNYARCISPVEHACYVGDSSARFFHEACMEHHLLIGQGVAGGAFMTNQPCFSADITSLSKTDYPLSHHARLFGLRAAVAIRLRSIYSTLDDYVLEFFLPVDCNDSEEQKKMLTSLSMIIQRVCRSLRVITNKELEKNNLSLNEVMAIAADSGFARNAIRPDLQDRRTAASLGSEEKFIETMSKKFSEQRRRQENLILKEDADHGRECSPSVQGSFLSSLGVNKTGEKRRVKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGSFQFDSFYSKFSDLSSPNLSGTTLISTLNQIDNPVSLSIQPDPNTLSPEGASKSPSSSCSQSSFSSHSCSSMSEQQHHTSNVAAGSIKDLSVGEDSVDVLKRIRSETELKSLIQDNKTKLIPRSQSQETLGEHPKTEYLQPFIKTAHKASQKEDAHKVKITFGDEKARFRLPKNWSYEDLVQEVARRFNVSDMSKFDIKYLDDDYEWVLLTCDADLEECIDVCQSSEASTIKLCLQTSSNFIRSSLEFR 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00744 908 Pfam PB1 domain 815 895 IPR000270 GO:0005515
Vivi3g00744 908 ProSiteProfiles RWP-RK domain profile. 579 660 IPR003035 -
Vivi3g00744 908 PANTHER PROTEIN NLP8 108 899 IPR045012 GO:0003700
Vivi3g00744 908 Gene3D - 815 897 - -
Vivi3g00744 908 SUPERFAMILY CAD & PB1 domains 806 899 - -
Vivi3g00744 908 MobiDBLite consensus disorder prediction 695 739 - -
Vivi3g00744 908 SMART PB1_new 814 897 IPR000270 GO:0005515
Vivi3g00744 908 Pfam RWP-RK domain 592 640 IPR003035 -
Vivi3g00744 908 CDD PB1_NLP 815 895 IPR034891 -
Vivi3g00744 908 ProSiteProfiles PB1 domain profile. 814 897 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00744 Vivi-Chr3 12386081 12390236 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00744 24 899 NLP Transcription Factor Family AT1G20640 46.787 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vivi3g00744 PB1 1.9e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00744 - - gmx:100790922 1241.1