Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00742 ATGGGAGATGGTGCTGCTGTTACATCATCTGCAACCATGATGGAAGCACCGCCGCAAGATGTAAATTCAATGGATTTTGATTATATGAGTGAGCTTTTGTTAGATGGTTGTTGGTTGGAAGCTTCTGCGGATGGATCTGAGTTCTTGCTGCAAAGTTCTCCCTTTTCAAATCCAATCTTTGACCCGTCGTTTTCTTGGCCTGTCTTGGAGAATAACGAGCCACCCCGCATTGAGGATCGGAATGAATTACAAGATGATCCTCTTGGTACTGAACAAGAAAATAGGATTATGGTTAATAATGTTGGTTGTAGTGACCGGCAAGAGTGTGAGTTTGAGACGCGTTTGGGTGAAGGGGTTAGTAGATTGTGGATTCCGCCGACGCCTAATCAAGGACGTGGTGGATCTTCCATAACGGAGAAGCTGATACGAGCTCTCAGGTGGATCAAGGATTTCAATAGGAACAAGGATATGCTTATACAAATATGGGTGCCGGTTAATAGAGGGGATGATAGGCCGATTCTGAGGGCTAATGATCTTCCTTTTTCACTTGAATCAAGTTCTTTAAACCTAGCAAAGTACCGAGAAATTTCAGTGAGATATCAGTTTTCCGCAGAGGAGGAGGACTCGAAGGAGTTGGTGGCAGGTTTGCCTGGTCGAGTTTATAGGGATAAGATTCCTGAGTGGACACCTGATGTTCGATTCTTCAGGAGTGAAGAGTATCCGCGAGTTGACCATGCTCAAGAGTGTGATATACACGGAACATTAGCAGTTCCAGTCTTTGAACAAGGGAGTCGGACATGTTTGGGCGTTATTGAAGTGGTGATGACTACCCAGCAGAGCAACTATGGCCGTGAACTTGAGACAGTTTGCAAAGCGCTTGAGGTTGTTGATCTCAGAAGCTCTGGACATTCAAGCCTCCAGAATGTGAAGGCACGTGACAAGTCCTACGAAACCGCACTACCCGAGATTCAAGAGGTTTTGAGATCTGCATGTGAAATGCACAAATTACCTTTGGCTCAGACTTGGGTTTCTTGCATCCAACAGGGAAAAGATGGTTGCCGGCATTCTGATGATAATTATGCACGCTGTATCTCTCCAGTGGAACATGCTTGCTATGTTGGTGATTCCTCGGCCAGGTTTTTTCACGAGGCTTGCATGGAGCATCACTTGTTAATAGGCCAAGGTGTTGCCGGGGGTGCTTTTATGACAAACCAACCGTGCTTCTCGGCTGACATTACTTCTTTAAGCAAGACCGATTATCCACTGTCTCATCATGCCAGGTTGTTTGGGTTGCGGGCTGCAGTTGCCATACGACTCCGAAGCATCTATAGTACTTTGGATGACTATGTTCTTGAGTTCTTCTTGCCTGTAGATTGCAACGACAGTGAAGAACAGAAAAAGATGCTCACATCACTGTCCATGATTATTCAAAGGGTTTGCCGCAGCTTGCGAGTTATAACCAATAAGGAATTGGAGAAAAATAACTTATCACTTAATGAAGTAATGGCCATTGCCGCGGATAGTGGATTCGCTAGGAATGCAATTAGGCCGGACCTCCAAGACAGGAGAACAGCTGCCTCATTGGGTAGCGAAGAAAAGTTTATCGAAACAATGAGTAAAAAATTCTCAGAACAAAGGCGGCGACAAGAAAATCTTATCTTAAAAGAAGATGCTGACCATGGTAGGGAGTGTTCTCCTTCTGTTCAGGGTAGCTTCTTGTCAAGTTTGGGAGTAAATAAAACAGGAGAGAAAAGACGGGTCAAGGCGGAGAAAACTATCACTCTTCAAGTCCTGAGGCAATATTTCGCCGGAAGTCTAAAAGATGCTGCAAAGAATATTGGCGTCTGTACTACAACCCTGAAAAGGATATGCCGGCAACATGGTATTAAGCGTTGGCCTTCTCGGAAGATAAAAAAGGTTGGTCACTCCTTGCAGAAACTTCAACTTGTCATTGACTCGGTTCAAGGTGCCTCTGGTTCATTTCAATTTGATTCCTTCTATTCAAAATTCTCGGATCTATCGTCTCCAAACTTATCAGGAACCACCCTGATCTCAACTCTGAATCAAATCGATAATCCAGTCTCATTAAGCATACAGCCCGATCCCAACACGTTGAGTCCAGAAGGTGCGTCGAAATCACCTTCGTCTTCATGTAGTCAAAGTTCCTTTTCAAGCCATTCCTGTTCCAGCATGTCCGAGCAACAGCACCATACAAGCAATGTTGCTGCTGGTAGTATCAAAGATCTATCCGTCGGTGAAGATTCCGTTGACGTGTTGAAGAGAATCCGAAGTGAAACAGAACTTAAAAGTCTGATTCAAGATAATAAAACAAAACTCATACCAAGATCACAAAGCCAGGAAACACTTGGCGAACACCCGAAAACCGAGTATCTCCAACCCTTTATAAAAACCGCTCACAAAGCATCTCAAAAGGAAGATGCTCACAAAGTAAAAATTACATTCGGAGACGAGAAAGCCCGGTTTAGGTTGCCAAAGAACTGGAGTTACGAAGATCTCGTGCAGGAAGTTGCTAGGAGATTTAATATTTGGAGGAGTGCATTGATGTTTGTCAATCTTCTGAGGCTAGTACTATCAAACTTTGTCTGCAAACCTCAAGTAATTTTATCAGGAGTTCTTTAG 2640 0.4402 MGDGAAVTSSATMMEAPPQDVNSMDFDYMSELLLDGCWLEASADGSEFLLQSSPFSNPIFDPSFSWPVLENNEPPRIEDRNELQDDPLGTEQENRIMVNNVGCSDRQECEFETRLGEGVSRLWIPPTPNQGRGGSSITEKLIRALRWIKDFNRNKDMLIQIWVPVNRGDDRPILRANDLPFSLESSSLNLAKYREISVRYQFSAEEEDSKELVAGLPGRVYRDKIPEWTPDVRFFRSEEYPRVDHAQECDIHGTLAVPVFEQGSRTCLGVIEVVMTTQQSNYGRELETVCKALEVVDLRSSGHSSLQNVKARDKSYETALPEIQEVLRSACEMHKLPLAQTWVSCIQQGKDGCRHSDDNYARCISPVEHACYVGDSSARFFHEACMEHHLLIGQGVAGGAFMTNQPCFSADITSLSKTDYPLSHHARLFGLRAAVAIRLRSIYSTLDDYVLEFFLPVDCNDSEEQKKMLTSLSMIIQRVCRSLRVITNKELEKNNLSLNEVMAIAADSGFARNAIRPDLQDRRTAASLGSEEKFIETMSKKFSEQRRRQENLILKEDADHGRECSPSVQGSFLSSLGVNKTGEKRRVKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGSFQFDSFYSKFSDLSSPNLSGTTLISTLNQIDNPVSLSIQPDPNTLSPEGASKSPSSSCSQSSFSSHSCSSMSEQQHHTSNVAAGSIKDLSVGEDSVDVLKRIRSETELKSLIQDNKTKLIPRSQSQETLGEHPKTEYLQPFIKTAHKASQKEDAHKVKITFGDEKARFRLPKNWSYEDLVQEVARRFNIWRSALMFVNLLRLVLSNFVCKPQVILSGVL 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00742 879 PANTHER PROTEIN NLP8 108 849 IPR045012 GO:0003700
Vivi3g00742 879 MobiDBLite consensus disorder prediction 695 739 - -
Vivi3g00742 879 Pfam RWP-RK domain 592 640 IPR003035 -
Vivi3g00742 879 ProSiteProfiles RWP-RK domain profile. 579 660 IPR003035 -
Vivi3g00742 879 SUPERFAMILY CAD & PB1 domains 806 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00742 Vivi-Chr3 12385836 12390237 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00742 23 849 NLP Transcription Factor Family AT1G76350 44.934 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vivi3g00742 RWP-RK 7.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00742 - - gmx:100790922 1140.56