Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00717 ATGCCGATTGGACTCACTCCTCACATAATTGAGATTGATGCTGGAGTCGATCTATTAAGCATTCTATTTGAATTTGCTCGAAGTCGTGGGAGATCCATCCGCATCCTCAGTGGAACAGGAGTGGTGGCTGATGTCACGCTTCAACAACCTAATAGGAGATTTGTATCTGTTTTAGGAATGTTTGATCTTCTGTCAATTCATGGCACAATTATCCCGATGTCGAGAATGGAGTGTTTAGGAGTATTACAAATTACCTTATCAGATCCTTGGAGTGATGAAGATGACGTGATTCGAGGGAGTGTGATCTCCCCTCTATTGGCTTATAGTCCGATGCGAGTCACAGTTGTCTCCTTTTCAAATGATGCATTTTAA 372 0.422 MPIGLTPHIIEIDAGVDLLSILFEFARSRGRSIRILSGTGVVADVTLQQPNRRFVSVLGMFDLLSIHGTIIPMSRMECLGVLQITLSDPWSDEDDVIRGSVISPLLAYSPMRVTVVSFSNDAF 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00717 123 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 5 123 IPR014476 GO:0003680
Vivi3g00717 123 SUPERFAMILY AF0104/ALDC/Ptd012-like 5 120 - -
Vivi3g00717 123 CDD DUF296 6 118 IPR005175 -
Vivi3g00717 123 Pfam Plants and Prokaryotes Conserved (PCC) domain 7 120 IPR005175 -
Vivi3g00717 123 ProSiteProfiles PPC domain profile profile. 1 123 IPR005175 -
Vivi3g00717 123 Gene3D - 7 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00717 Vivi-Chr3 11982107 11982478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00717 8 123 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 36.207 7.92e-18 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00717 - - vvo:131657541 233.802