Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00706 ATGGATTTGGCTACTTTATTTGGTAAATTGTTGGAACACACAATGGAGCTGAAAAGGCTAGCTGATGATGAAAAAGGTAACAAGAATAAGAAAAGTCTAGCTTTCAAGACCGAGGAAGAAAAAGATTCTGACTCTGATGATGATTTGAAATTTTTTTCTTCCGAAACTTCAAAATATTTGAAGTATGACAAGCAACAAGATGTTCAACACAAGAATGAAGGGAGGTGTACCATGGAAAACACCGACCATTATGATTCCAACTACTATCGATACCGTGACAGTGGAACATCTGATTCTGAAGCGGACAATGACAGTAATTCGGTGTCCAGTGCGTACCAAAGTTCAAGTGATGGCGATGGCGATGGTGATAGTCACAATGAAAAATTCCATGAATTTGATGCAGTTGTAGGTGATAGAATAGTGAAAATTGATGCCCTTAATGCTGATGAAATTCGTGCTATGGAATTCGGTACAGTTGATGAAGCTAATTTGTTTTATTTCAAGTATGCTAAATGTAAAGGGTTTGCCATTAGGAAAAGTGATGTTAGGAGAAGATCGACTGGGGGTGGACAAACAATTATAATGAGGCAGTTTGTATGCAATAAACGCCGTCTAAGAGATACAAAACACTTAAGGAGGCTTGATAGAAAAAGAGAACACAGACCTACGACCCGCACTAATTGTCCCGCTAGGCTTCGTGTGCATTACAACCCCCAGAAGGGTAGTTATGTAGTGTCATGTTTTGAAGAGGCTCACAACCATGAATTAACACCATCTAGGTTTATCCACTTACACCCCATTTATCGTGAGATTACTGCAGCAGATAGAGCTCAGATTGACGGTCTACAGTCAAATGGAATTAGAACTTGTCATATAATGGGGTACATGGTTGCTCAGAAGGGTGGACACGATCGTGTTGGGTTTACAAAGAAGGATCTGTACAATTATTTTGATAGTAAAATGCGTGCTACTTTTAAAGATGGTGACGTTGCCGCTGCTATAAATTATCTAAATGTGAAGTCATCTACTGATCCCATGTTATATGGTAAATATGCCGTAGGCATGGATGGACGAATGAAGTCCCTTTTTTGGGCTGATGGAAGCAGTAGATCTGACTATTTTTGTTTTGGCGATGTGATTGCGTTCGACACGACTTACAAGAAGAACAAATACAACTACCCATTGGTTATATTTTCAGGGTGTAACCACCACTCTCAGACAGTTATTTTTGGTGCTGCATTGGTGTCAGATGAAACGACAGAAACGTATAAGTGGTTGTTGGAGTGTTTTTTAGAGTGCATGGAAAATAAATACCCAGAAGCAGTTGTAACAGATGGAGATGGGGCGATGAGGGAATCTATAAAACAGGTGTTTCCGGATGCGACACATCGTTTATGCGCTTGGCATTTGAACAAGAATGCGGCTGAGAATGTAAAGAACTCGGAATTTTTGAAAGATTTTCAAAAAGCCATGTACTCTAATTTTACAAAGGATGAATTTGAAGAGTTTTGGTCAAAAACAATTAAAGAAAACGGACTTGAAGGAAATCCTTGGGTTCAAAAAACGTACGAGAACAGGTCACTATGGGCAACTGCATATCTACGTGAGAAGTTTTTTGCACGTATAAGAACTACGTCTCAATGTGAAGCCGTCAATGCAATCATCAAGAGTTATGTCAGGAAGAAAGGCTGCATTTTTGAATTTATGCACAATTTTGATCAGGCTATGAGATCTTATAGAAACAATGAACTGATTGCCGATTTTAAATCAATGTTTTCAGAACCTGTGATGACTACTCAACTGCGTGCCCTTGAGAGCCATGCTGCGAAAGTTTATACTACGGAGATTTTCAAGGAAGTCAGAGATGAAATAGTGAAGGCTGGATCATTGATTGTTAAGGAAAGGTTAATTCACAACGGATTTAAGACTTATCGATTTACAAAATATTGTTGTGATAACTATGACGTAGAGGTTGTGTATGATGGTGAAACACTTCAATGCGAGTGTAGGTTATGGGATTCTCGTGGGATTCCATGTTCTCATATGTTTGGTGTCATGAAGGAAGAACATGTTAGTCTCATTCCCACCGGTTTGATTTTGTCGAGGTGGACGAAGGATGCAAAAATTCAATACTTGAACATGAATTGTAATGGTTCTGATGATCCTAATATGATTGAGCTAGCTCGGTTTGGTGCATATTGTTCTGCATTTACTGTTTTTTGCAGAGAAGCTTCAAAAAAGGAAGGTGTTTATGGGGACATAATGGGTGATATTCTGATGTTACAAAAAAAGTATTGCAGTACGGACGATCCTATTTTGGCATCGAACTCAGCCGTAGGTGATCCAAATATTGTGAGTAGCAAAGGTGCTCCAAAGAAAAAAAAGAATGACATAAAAGCTATTAGACGATGTTCTAAATGCAATAGTAGAACTCATAATGCAAGGAGTTGTTTGGTTGCGGAAAATGCGCCATTTGAACAAAATGTTGGTATGACGTCGCGGCCAGTAACTGATTCATTCAGCCTAGTTGTGAAGAATAATTTGTTTGTTAAAACAGAACAAGAATGCAAAAAGAGGTCGCATTGGGGGAAGTAG 2595 0.3888 MDLATLFGKLLEHTMELKRLADDEKGNKNKKSLAFKTEEEKDSDSDDDLKFFSSETSKYLKYDKQQDVQHKNEGRCTMENTDHYDSNYYRYRDSGTSDSEADNDSNSVSSAYQSSSDGDGDGDSHNEKFHEFDAVVGDRIVKIDALNADEIRAMEFGTVDEANLFYFKYAKCKGFAIRKSDVRRRSTGGGQTIIMRQFVCNKRRLRDTKHLRRLDRKREHRPTTRTNCPARLRVHYNPQKGSYVVSCFEEAHNHELTPSRFIHLHPIYREITAADRAQIDGLQSNGIRTCHIMGYMVAQKGGHDRVGFTKKDLYNYFDSKMRATFKDGDVAAAINYLNVKSSTDPMLYGKYAVGMDGRMKSLFWADGSSRSDYFCFGDVIAFDTTYKKNKYNYPLVIFSGCNHHSQTVIFGAALVSDETTETYKWLLECFLECMENKYPEAVVTDGDGAMRESIKQVFPDATHRLCAWHLNKNAAENVKNSEFLKDFQKAMYSNFTKDEFEEFWSKTIKENGLEGNPWVQKTYENRSLWATAYLREKFFARIRTTSQCEAVNAIIKSYVRKKGCIFEFMHNFDQAMRSYRNNELIADFKSMFSEPVMTTQLRALESHAAKVYTTEIFKEVRDEIVKAGSLIVKERLIHNGFKTYRFTKYCCDNYDVEVVYDGETLQCECRLWDSRGIPCSHMFGVMKEEHVSLIPTGLILSRWTKDAKIQYLNMNCNGSDDPNMIELARFGAYCSAFTVFCREASKKEGVYGDIMGDILMLQKKYCSTDDPILASNSAVGDPNIVSSKGAPKKKKNDIKAIRRCSKCNSRTHNARSCLVAENAPFEQNVGMTSRPVTDSFSLVVKNNLFVKTEQECKKRSHWGK 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00706 864 ProSiteProfiles Zinc finger SWIM-type profile. 654 690 IPR007527 GO:0008270
Vivi3g00706 864 PANTHER OS01G0519700 PROTEIN 150 810 - -
Vivi3g00706 864 MobiDBLite consensus disorder prediction 21 40 - -
Vivi3g00706 864 Pfam FAR1 DNA-binding domain 165 257 IPR004330 -
Vivi3g00706 864 SMART 26again6 665 692 IPR006564 GO:0008270
Vivi3g00706 864 MobiDBLite consensus disorder prediction 87 127 - -
Vivi3g00706 864 Pfam SWIM zinc finger 657 684 IPR007527 GO:0008270
Vivi3g00706 864 Pfam MULE transposase domain 379 473 IPR018289 -
Vivi3g00706 864 MobiDBLite consensus disorder prediction 100 119 - -
Vivi3g00706 864 MobiDBLite consensus disorder prediction 21 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00706 Vivi-Chr3 11822971 11832443 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi3g00706 MULE 6.4e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00706 - - vvo:131620026 1460.28