Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00676 ATGATAACAGAAAACTCCGGCAAACACTATCCTCCCCCACTCGCCTCTCACAACGACGTCGTTAACGATGCTACTCTTTTCTGGGACACTCTTCGTCGCTTTCACTTTCTTATGGCTACAAAATTCATGATTCCTGTGATTGGAGGTAAGGAACTGGATTTGCACGTTCTCTACGTGGAGGTTACAACCAGAAGCGGTTATGAGAAAGTTGTTGCGGAGAAGAAATGGAGAGAAGTAGGTACTGTGTTTAGATTCTCGTCTAAGACTACGAGCGCTTCTTTTGTATTGAGAAAACACTATTTGAATCTTCTTTACCATTACGAACAAGTTCACTTCTTCAAACTTCAAGGTCCTGTTTGCACTCCATCACCTGATGCATTTTCTGGAAACAGTCCTTCTTGGAAACCTGAATTAGCTATTGTTCAATATTCACCTAAGATGGTAAACAATGGTTCTGAATCTCATGACGAAGTGGATGAAGAAAGTTCGTGTGTTTTGGGAAAAGGAACAATAGAAGGGAAATTTGATTGTGGTTATATAGTATCAGTGAAATTGGGTTCTGAGGTTCTGAGAGGTGTGCTTTATCACCCAGAACTAGTGGTTTCTCCTACTCCTTCACAACATGGCAGTGCCACTGCCATTGTACCATTCAATCACAAACCCTATGGCTCTGGTAGGAGGAAGAGAAGAAGGAAAAGAAAGTGGGACCCTAACTATCCAAAGCCAAACAGGAGTGGCTATAACTTCTTCTTTGCTGAAGAACATTACAAACTCAAACAACTCTACCCAAAGAGAGAAAGGGAGTTTACTAAAATGATTGGCCAGTCATGGAATTGTCTCAGTCCTGAAGAAAGAATGATTTACCAAAACATTGGCTTAAGAGATAAAGAAAGGTACAAAAGAGAGTTGACAGAGTACAAAGAGAAAATGAAGGATAGACAGACAGAAGAATTTGGAAATTCAAAATAA 969 0.4025 MITENSGKHYPPPLASHNDVVNDATLFWDTLRRFHFLMATKFMIPVIGGKELDLHVLYVEVTTRSGYEKVVAEKKWREVGTVFRFSSKTTSASFVLRKHYLNLLYHYEQVHFFKLQGPVCTPSPDAFSGNSPSWKPELAIVQYSPKMVNNGSESHDEVDEESSCVLGKGTIEGKFDCGYIVSVKLGSEVLRGVLYHPELVVSPTPSQHGSATAIVPFNHKPYGSGRRKRRRKRKWDPNYPKPNRSGYNFFFAEEHYKLKQLYPKREREFTKMIGQSWNCLSPEERMIYQNIGLRDKERYKRELTEYKEKMKDRQTEEFGNSK 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00676 322 ProSiteProfiles ARID domain profile. 21 112 IPR001606 GO:0003677
Vivi3g00676 322 CDD ARID_HMGB9-like 23 108 IPR045303 GO:0003677
Vivi3g00676 322 Pfam ARID/BRIGHT DNA binding domain 26 108 IPR001606 GO:0003677
Vivi3g00676 322 Gene3D - 14 118 IPR036431 GO:0003677
Vivi3g00676 322 CDD HMG-box_AtHMGB9-like 240 306 - -
Vivi3g00676 322 SMART bright_3 22 113 IPR001606 GO:0003677
Vivi3g00676 322 SMART hmgende2 239 308 IPR009071 -
Vivi3g00676 322 Pfam HMG (high mobility group) box 240 307 IPR009071 -
Vivi3g00676 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 314 - -
Vivi3g00676 322 MobiDBLite consensus disorder prediction 222 237 - -
Vivi3g00676 322 SMART ARID_2 18 108 - -
Vivi3g00676 322 SUPERFAMILY ARID-like 17 120 IPR036431 GO:0003677
Vivi3g00676 322 Coils Coil 296 316 - -
Vivi3g00676 322 Gene3D High mobility group box domain 223 322 IPR036910 -
Vivi3g00676 322 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 240 307 IPR009071 -
Vivi3g00676 322 MobiDBLite consensus disorder prediction 205 240 - -
Vivi3g00676 322 SUPERFAMILY HMG-box 237 313 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00676 Vivi-Chr3 11318064 11320212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00676 8 314 ARID Transcription Factor Family AT1G76110 61.859 3.02e-127 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi3g00676 ARID 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00676 - - gmx:100784746 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00676 3 11318064 11320212 Vivi3g00676 3 11318064 11320212 ECH