Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00669 ATGACTAAACAATCTGACTCCGTCGTTTACCTTCACGGTAACCTTGAATTGAAAATCGTCGAGGCTCGTTTCTTACCTAACATGGACATGTTCTCAGAGCGTTTTCGAAGATTCTTCTCCGCTTTCAATTCATGCAAAACTTCTATTTCTGGTCAAGGAAAGAATCACGAGCCACGTCATCATCATAATCATAAGATCATCACCAGCGATCCTTACGTAACGGTTTGTCTCGCCGGAGCTACGGTGGCGAGAACGAGAGTGATTTCGAACTCGCAGTCGCCGAAATGGGAAGAGGATTTTAGAATTCCGTTGGCTCATCCTGTTTCTCAGGTTGAATTCTATGTGAAGGATAATGATATGTTCGGCGCTGATTTGATCGGAATCGCAACGGTTTCGGCGACGAGGATTTTATCTGGTGATAGTATATGTGATTGGTTTCCGATTATAGGTACTTTCGGTAAGCCGCCGAAGCCGGATTGCGCGGTTTTTCTTGAGATGAAATTCACGAGGTGTGATGATAATCCTCTGTATCGGTCTGGTGTTTCGCTTGAGGCGGATAGGTTTAACGTTGAGGATTCGTATTTTCCGGTGAGGCGTGGTGGATCGGTGACGCTGTATCAAGATGCGCATGTTCCGGATTCGATGTTGCCGGGGATTGAATTGGATGATGGTGTGGAGTTTCAGCAAGGGAAGTGCTGGGAAGATATCTGTCACGCGATCTTGGAAGCGCATCATTTGGTGTATATTGTCGGTTGGTCAATTTTCCATAAGGTGAAGCTTGTTAGGGAACCAACTAAAACCTTGCCTAGTGGTGGAAATTTGAATTTGGGGGAATTGCTCAAGTACAAATCACAAGAAGGTTTGCGAGTTTTACTGTTGGTTTGGGATGATAAAACTTCACACAGTAAATTTTTCATAAACACGAACGGAATAATGCAAACTCATGATGAAGAAACTCGAAAGTTTTTCAAGCATTCTTCAGTTACATGCGTGTTGTCACCAAGATATGCCAGCAGTAAGCTTAGCATTTTCAAGCAGCAGGTTGTTGGAACGCTTTTTACGCACCATCAGAAATGTGTGATCGTTGATACCCAAGCACATGGAAATAATCGGAAGATAACTGCATTTATAGGTGGTCTAGATCTTTGTGATGGTCGGTATGATACACCTGAGCATAGAATTTGCCGTGATCTTGACACTGTTTATAAGGATGATTATCATAATCCCACATTTTCTGCAGGAACCAAGGGTCCAAGGCAACCATGGCATGATCTGCATTGTAAAATTGAAGGGCCTGCTGCATATGATATACTCACTAATTTTGAGCAGCGCTGGAGGAGAGCCACCAAATGGTCTGAGTTAGGTCAAAAATTAAAAAGAGTATCGCACTGGCATGATGATTCTTTAATTAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCTGAATCAATGCCAAACGACGATCCTGAATTATGGGTTTCAAAGGAAGATGACCCTGAAAATTGGCATGTTCAGGTTTTTCGATCCATAGATTCAGGCTCTTTGAAAGGATTTCCTAAGGATATATATGAAGCCAGGGCTCAGAATCTTGTTTGTGCTAAGAATTTGGTCATAGACAAGAGTATTCAGACAGCTTACATACATGCCATTAGATCTGCACAGCATTTTATTTATATTGAGAATCAATACTTTATTGGATCATCCTTTGCTTGGCCATCTTACAAAGAAGCAGGTGCTGATAACTTAATTCCTATGGAGTTGGCGCTGAAAATTGTCAGTAAGATCAGATCTCGGGAGAGATTTACGGTTTATGTTGTCATTCCAATGTGGCCAGAAGGTGTCCCTTCTTCTGTCACAGTGCAAGAGATTCTCTATTTTCAGGGACAAACTATGCGAATGATGTATGGAATCATAGCCCGGGAATTAAAATATATGAACATGAACAATAGCCATCCACAAGATTACCTCAATTTTTACTGTCTTGGTAACCGAGAGAAGTTTGCAACTGAAGATTCAAATCCAAAGAGTTCACATTCCGATGATGGCGACACGGTTTCAGCTTCACAAAAGTTTCAACGGTTTATGATTTATGTACATGCCAAGGGAATGGTTGTGGATGATGAGTATGTGATGGTTGGATCTGCCAATATCAACCAACGATCTTTGGGTGGATCAAGAGATACCGAGATAGCAATGGGTGCATATCAACCCCGTCATACATGGAACAAGAAAAAGGGTCACCCTCGTGGGCAGGTATATGGGTATCGAATGTCCTTGTGGGCAGAGCACTTAGGGACCATACATGACTGCTTCAAGGAGCCTGAAAGTTTGGAATGTGTGGAGACTGTGAACAAGATTGCGGAACAAAACTGGAAGAAATTTACAGCTGATGATTTTAAGCCATTGCAAGGGCACATTATGAAGTATCCCATCAAAGTGAATGCAGATGGGAAAATAAGCTCCTTACCTGGGTTCGAGTCTTTCCCAGATGTCGGCGGCAAGGTGCTTGGTTCCCGATCTACCCTGCCTGATGCTCTGACTACATAG 2550 0.4259 MTKQSDSVVYLHGNLELKIVEARFLPNMDMFSERFRRFFSAFNSCKTSISGQGKNHEPRHHHNHKIITSDPYVTVCLAGATVARTRVISNSQSPKWEEDFRIPLAHPVSQVEFYVKDNDMFGADLIGIATVSATRILSGDSICDWFPIIGTFGKPPKPDCAVFLEMKFTRCDDNPLYRSGVSLEADRFNVEDSYFPVRRGGSVTLYQDAHVPDSMLPGIELDDGVEFQQGKCWEDICHAILEAHHLVYIVGWSIFHKVKLVREPTKTLPSGGNLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTNGIMQTHDEETRKFFKHSSVTCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQAHGNNRKITAFIGGLDLCDGRYDTPEHRICRDLDTVYKDDYHNPTFSAGTKGPRQPWHDLHCKIEGPAAYDILTNFEQRWRRATKWSELGQKLKRVSHWHDDSLIKLERISWILSPSESMPNDDPELWVSKEDDPENWHVQVFRSIDSGSLKGFPKDIYEARAQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFIGSSFAWPSYKEAGADNLIPMELALKIVSKIRSRERFTVYVVIPMWPEGVPSSVTVQEILYFQGQTMRMMYGIIARELKYMNMNNSHPQDYLNFYCLGNREKFATEDSNPKSSHSDDGDTVSASQKFQRFMIYVHAKGMVVDDEYVMVGSANINQRSLGGSRDTEIAMGAYQPRHTWNKKKGHPRGQVYGYRMSLWAEHLGTIHDCFKEPESLECVETVNKIAEQNWKKFTADDFKPLQGHIMKYPIKVNADGKISSLPGFESFPDVGGKVLGSRSTLPDALTT 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00669 849 Gene3D C2 domain 8 168 IPR035892 -
Vivi3g00669 849 PIRSF PLD_plant 1 849 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vivi3g00669 849 CDD C2_plant_PLD 7 169 - -
Vivi3g00669 849 SMART C2_3c 14 145 IPR000008 -
Vivi3g00669 849 ProSiteProfiles C2 domain profile. 1 146 IPR000008 -
Vivi3g00669 849 Pfam PLD-like domain 548 731 IPR025202 -
Vivi3g00669 849 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 695 722 IPR001736 GO:0003824
Vivi3g00669 849 Pfam Phospholipase D Active site motif 352 386 IPR001736 GO:0003824
Vivi3g00669 849 SUPERFAMILY Phospholipase D/nuclease 530 781 - -
Vivi3g00669 849 Pfam Phospholipase D C terminal 770 839 IPR024632 -
Vivi3g00669 849 Pfam C2 domain 13 148 IPR000008 -
Vivi3g00669 849 Gene3D Endonuclease Chain A 519 744 - -
Vivi3g00669 849 FunFam Phospholipase D delta 223 467 - -
Vivi3g00669 849 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 351 386 IPR001736 GO:0003824
Vivi3g00669 849 SMART pld_4 695 722 IPR001736 GO:0003824
Vivi3g00669 849 SMART pld_4 351 386 IPR001736 GO:0003824
Vivi3g00669 849 PANTHER PHOSPHOLIPASE D 3 840 IPR015679 -
Vivi3g00669 849 Gene3D Endonuclease Chain A 225 470 - -
Vivi3g00669 849 SUPERFAMILY Phospholipase D/nuclease 186 457 - -
Vivi3g00669 849 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 169 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00669 Vivi-Chr3 11104431 11112453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00669 3 680 Phospholipase D Gene Family (Wang group) AT4G35790 65.755 0.0 948
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00669 K01115 - gmx:100795859 1490.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00669 3 11104431 11112453 Vivi3g00669 3 11104431 11112453 ECH