Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00614 ATGTCGACACCAGGGGAAGATCAAATTCACCATTTCTCACCATTCAAATTCGATTTATTGCATTCCCCTAACCCTTCTCATGTGAATCCTTATACTCCTATGCTTCCCTTGAGTCAAAGAAACGGAATCAATAATGTTAACTTGCATGCTAGTAATGTTGAAGTGTTTCCTACTCAGAGTAATACGGTTAATCTTCCTCCTCTTCTTCAAATTGAAACCAATCAAAGAGGAAAGCATAATGGTAAATCAAAAGTTTCAAGAAATTCAAAATCTGCAGCGGCTCAGATGACAAATGGAGAGTCAGCCAATGCAGCGGCAGTAAACAACTGTCGTTATGACAGTTCCTTAGGATTGTTAACCAAGAAATTTGTCAGCTTGATCCAAAATGCTAAGGATGGTACCCTTGATCTAAATAAAACTGCTGAGGTCTTAGAGGTTCAAAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACTTCAAAGAACCATATACGGTGGAAGGGTTGTGATGGAATTGGGCCACGAGAACTAGAGGATCAAGTTAATACTCTAAAGGCTGAAGTTGAAAGTTTATATGCTGAGGAATTCAAACTTGAGGAGTGTATAAGCGAAAGGAAGGAGCTTCTCAGAAACCTGGAAGAAGGTGAAAACACCGGAAAGTACCTTTTTTTAACCAAGGAAGATATTCTTACCCTTCCATGCTTTCAGAATAAGCAACTTATTGCAGTCAAGGCTCCGAAAGCTAGTTTCATTGAGGTCCCCGATCCAGATGAGGAATTAGGCTTCCACCAAAGGCAGTACAGAATGATTATTAGAAGTGCAACTGGACCGATAAATCTGTACCTCTTGAACAAGCACGACCACAAGTTAGAGGATGTGAGTGTCCAACCGGAAGAGTCAATGGACCCATCGTGGAGTAGCAACCACTGCAGAACGGAGCGTGTCGGATTATCAGAAAGCAATGGTTATCAGAAAAACCCTTCTGGGAGTTTAAGTTCGCATGGCTCAGAGGCTTTTGGAATTCAACAAATTACTCCTATGAATTTAGATGTTGATGGTGACTATTGGTTTCAATCAGATCCTGAAGTTGGCCTAACACAATTGTGGGGGTAG 1137 0.4046 MSTPGEDQIHHFSPFKFDLLHSPNPSHVNPYTPMLPLSQRNGINNVNLHASNVEVFPTQSNTVNLPPLLQIETNQRGKHNGKSKVSRNSKSAAAQMTNGESANAAAVNNCRYDSSLGLLTKKFVSLIQNAKDGTLDLNKTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCDGIGPRELEDQVNTLKAEVESLYAEEFKLEECISERKELLRNLEEGENTGKYLFLTKEDILTLPCFQNKQLIAVKAPKASFIEVPDPDEELGFHQRQYRMIIRSATGPINLYLLNKHDHKLEDVSVQPEESMDPSWSSNHCRTERVGLSESNGYQKNPSGSLSSHGSEAFGIQQITPMNLDVDGDYWFQSDPEVGLTQLWG 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00614 378 SMART E2F_TDP_2 111 176 IPR003316 GO:0005667|GO:0006355
Vivi3g00614 378 Gene3D - 106 178 IPR036388 -
Vivi3g00614 378 Pfam E2F transcription factor CC-MB domain 192 291 IPR032198 GO:0046983
Vivi3g00614 378 SUPERFAMILY "Winged helix" DNA-binding domain 111 174 IPR036390 -
Vivi3g00614 378 Coils Coil 206 226 - -
Vivi3g00614 378 CDD E2F_DD 187 294 IPR032198 GO:0046983
Vivi3g00614 378 Pfam E2F/DP family winged-helix DNA-binding domain 113 176 IPR003316 GO:0005667|GO:0006355
Vivi3g00614 378 Gene3D - 183 294 - -
Vivi3g00614 378 FunFam E2F transcription factor 1 105 178 - -
Vivi3g00614 378 PANTHER TRANSCRIPTION FACTOR E2F 71 377 IPR015633 GO:0000978|GO:0006357
Vivi3g00614 378 SUPERFAMILY E2F-DP heterodimerization region 187 293 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00614 Vivi-Chr3 10233324 10238380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00614 2 377 E2F-DP Transcription Factor Family AT1G47870 43.510 2.60e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vivi3g00614 E2F_CC-MB 9.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00614 K06620 - gmx:100797301 465.307