Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00605 ATGGCTGTTCAATCAAAATATCGTCTTATTACTTACTCACCAGAGATTATAGATGGAAAACCTATATTTGTTTCGTCGAATTCTCTTCCGTTGAAGGTGTCGAAATTTGAGCCGGCAGGTCATTCTTTTCATGCTGTAGCGCTTAAACTGCGCGGTGTTAAGAAAGAAGAAGAAAACAAAGAAGCTGATGTTAAGAAAGTGGTTGATGATAAGGATCAGGCTTATTTGCCGTCTGATTCTTATAGTAGTAAGAGTAAGAAGAAATCGGGTGATGGTGAGAAGCAGCAGCAAGATCATTATGCTTTATTGGGGTTGAGTCATCTTAGGTATCTTGCTAATGAGGATCAAATTCGGAAAAGTTACCGAGAAACTGCTTTGAGGTTTCATCCGGATAAGCAGGCGTCTTTGCTTCTTTCTGAGGAGACTGAAGCTGGGAAGCAGGCGAAGAAGGAGGAGATTGAGACTCATTTTAAGGCGATTCAGGAAGCGTATGAGGTTTTGGTTGATCCTATTAAGAGGAGGATTTATGATTCGACTGATGAGTTTGATGATGAGATTCCTACCGATTGTGCTCCACAGGATTTTTTTAAGGTGTTTGGTCCGGCTTTTATGAGGAATGGGCGGTGGTCGGTTAATCAGCCGATTCCGTCTCTTGGTGATGATAAGACTTCGATAAAGGACGTTGACGGTTTCTACAATTTTTGGTATTCGTTTAAAAGTTGGAGGGAGTTTCCGCAGTCTGACGAGTTTGATCTCGAGCAAGCTGATTCTCGAGATCATAGAAGATGGATGGAAAGGCAGAATGCGAAACTGTCGGAGAAAGCTAGGAAGGAAGAGTACACACGGATCCGAACTCTTGTTGATAATGCATATAAGAGGGATCCTAGAATATTGAGAAGAAAGGAAGAGGTAAAAGCAGAGAAGAAAAGGAAAAAGGAGTCCAAGTACTTGGCAAAGAAGTTGGAGGAGGAAGAAGCTGCTAGAATTGCAGAAGAGGAGAGACTAAGGAAAGCTGAGGAAGATAAAAAAGCTGCTGAAACTGCATCGGCACAGAAGAAAGTGAGGGAGAAGGAGAAAAAACTCTTGCGGAAGGAGCGAACACGCCTTCGGAATCTGTCAGGACCTGTCTCGTCAAAACATGTACTAGATATCTCTGAAGACGACGTAGAAAAGATTTGCTTGTCATTTGATATGGATCGGTTGAGGGGCTTGTGCGAGAAAATGGAAGGAAAAGAGGTATTAGAGCAGGCAGAAGCTCTAAGAGATGCACTTAGTAACAAGGAAGATGGTTGCAAGAAAGATGTGGCTGATGACAAAAGTACTCAACAAAATGGCACTGTCAAGGCTAATGGAAACCTTAGTTCTCTTGCTGGCTACGCGGAGAAAAAGGAGAAACCTTGGACTAAAGAAGAGATCGAGCTTTTGAGGAAGGGAATTCAAAAGTTTCCCAAAGGAACTTCAAGGAGGTGGGAGGTTGTTTCAGAATATATCGGCACTGGAAGATCTGTTGAAGAAATAATGAAAGCAACTAAAACTGTTCTCCTTCAAAAGCCAGATACAGCCAAAGCTTTTGATACATTTCTCGAGAAGAGGAAGCCTGCTGCACAATCAATTGCTTCTCCACTGACCACCAGAGAAGAATTGGAAGGGGTATCCATACCTGCCGCAACACCTGAAAACAGTACTGCCTCAAAAACACCGATACCAGCCGCAACTCCGATTCCAACAGCCACACCGACGGCAACTACAAATAACATTAGCTCGGAAGACCCTCAAGAAGTTTCTGAATCAGACGTGTGGTCTGCAGTGCAGGAAAGGGCACTAGTTCAAGCATTAAAAACCTTTCCAAAAGAAGCTAATCAGAGATGGGAGCGAGTATCTGCTGCTGTACCTGGGAAAACTGTGAATCAGTGCAAGAAAAAATTTGCCATGATGAAGGAAAATTTCAGGAACAAGAAAACTGATGTTTGA 1971 0.4287 MAVQSKYRLITYSPEIIDGKPIFVSSNSLPLKVSKFEPAGHSFHAVALKLRGVKKEEENKEADVKKVVDDKDQAYLPSDSYSSKSKKKSGDGEKQQQDHYALLGLSHLRYLANEDQIRKSYRETALRFHPDKQASLLLSEETEAGKQAKKEEIETHFKAIQEAYEVLVDPIKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQPIPSLGDDKTSIKDVDGFYNFWYSFKSWREFPQSDEFDLEQADSRDHRRWMERQNAKLSEKARKEEYTRIRTLVDNAYKRDPRILRRKEEVKAEKKRKKESKYLAKKLEEEEAARIAEEERLRKAEEDKKAAETASAQKKVREKEKKLLRKERTRLRNLSGPVSSKHVLDISEDDVEKICLSFDMDRLRGLCEKMEGKEVLEQAEALRDALSNKEDGCKKDVADDKSTQQNGTVKANGNLSSLAGYAEKKEKPWTKEEIELLRKGIQKFPKGTSRRWEVVSEYIGTGRSVEEIMKATKTVLLQKPDTAKAFDTFLEKRKPAAQSIASPLTTREELEGVSIPAATPENSTASKTPIPAATPIPTATPTATTNNISSEDPQEVSESDVWSAVQERALVQALKTFPKEANQRWERVSAAVPGKTVNQCKKKFAMMKENFRNKKTDV 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00605 656 SMART dnaj_3 97 172 IPR001623 -
Vivi3g00605 656 CDD DnaJ 98 169 IPR001623 -
Vivi3g00605 656 MobiDBLite consensus disorder prediction 534 596 - -
Vivi3g00605 656 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 654 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Vivi3g00605 656 ProSitePatterns Nt-dnaJ domain signature. 157 176 IPR018253 -
Vivi3g00605 656 ProSiteProfiles SANT domain profile. 595 650 IPR017884 -
Vivi3g00605 656 SUPERFAMILY Homeodomain-like 465 509 IPR009057 -
Vivi3g00605 656 Pfam Myb-like DNA-binding domain 599 644 IPR001005 -
Vivi3g00605 656 Pfam Myb-like DNA-binding domain 465 506 IPR001005 -
Vivi3g00605 656 SUPERFAMILY Chaperone J-domain 96 204 IPR036869 -
Vivi3g00605 656 MobiDBLite consensus disorder prediction 56 95 - -
Vivi3g00605 656 CDD SANT 600 646 IPR001005 -
Vivi3g00605 656 Coils Coil 407 434 - -
Vivi3g00605 656 ProSiteProfiles dnaJ domain profile. 98 180 IPR001623 -
Vivi3g00605 656 CDD SANT 466 508 IPR001005 -
Vivi3g00605 656 Gene3D DnaJ domain 81 190 IPR036869 -
Vivi3g00605 656 Coils Coil 304 355 - -
Vivi3g00605 656 SUPERFAMILY Homeodomain-like 598 652 IPR009057 -
Vivi3g00605 656 Gene3D - 460 517 - -
Vivi3g00605 656 Gene3D - 593 655 - -
Vivi3g00605 656 MobiDBLite consensus disorder prediction 555 596 - -
Vivi3g00605 656 ProSiteProfiles Myb-like domain profile. 600 646 IPR001005 -
Vivi3g00605 656 ProSiteProfiles Myb-like domain profile. 459 514 IPR001005 -
Vivi3g00605 656 Pfam DnaJ domain 98 177 IPR001623 -
Vivi3g00605 656 FunFam Myb family transcription factor 594 654 - -
Vivi3g00605 656 SMART sant 463 516 IPR001005 -
Vivi3g00605 656 SMART sant 596 648 IPR001005 -
Vivi3g00605 656 MobiDBLite consensus disorder prediction 56 73 - -
Vivi3g00605 656 MobiDBLite consensus disorder prediction 332 362 - -
Vivi3g00605 656 MobiDBLite consensus disorder prediction 430 451 - -
Vivi3g00605 656 PRINTS DnaJ domain signature 103 121 IPR001623 -
Vivi3g00605 656 PRINTS DnaJ domain signature 152 172 IPR001623 -
Vivi3g00605 656 PRINTS DnaJ domain signature 121 136 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00605 Vivi-Chr3 10125346 10128096 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00605 99 298 C2H2 Transcription Factor Family AT1G74250 28.870 3.90e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi3g00605 DnaJ 6.9e-17 CL0392