Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00590 ATGTCGACACCAGGGGAAGATCAAATCCACCATTTCTCACCATTCAAATTCGACCTATTGCATCATTCCCCTAACGCTTCTCATCTCAATCCTTTCACTCCTATGCTTCCCTTGAATCAAAGAAATGGAATTAATAATGTCAACTTGCATGCTAGTAATGTTGAGGTGTTTCCCAGTCAGAGCAACACGGTTAATCTTCCTCCTCTTCTTCAAATTGAAACCAATCAGAGAGGAAAGCATAATGGTAAATCAAAAGTTTCAAGAAATTCAAAATCTGCAGCATCTCAGATGACAAATGGAGAGTCAGCGAATGCAGCGGCAGTAAACAACTGTCGTTATGACAGTTCCTTAGGATTGTTAACCAAGAAATTTGTCAGCTTGATCCAAAATGCTAAGGATGGTACCCTTGATCTAAATAAAACTGCTGAGGTCTTAGAGGTTCAAAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACTTCAAAGAACCATATACGGTGGAAGGGTTGTGATGGAATTGGGCCACGAGAACTAGAGGATCAAGTTAATACTCTAAAGGCTGAAGTTGAAAGTTTATATGCTGAGGAATTCAAACTTGAGGAGTGTATAAGCGAAAGGAAGGAGCTTCTCAGAAACCTGGAAGAAGGTGAAAACACCGGAAAGTACCTTTTTTTAACCAAGGAAGATATTCTTACCCTTCCATGCTTTCAGAATAAGCAACTTATTGCAGTCAAGGCTCCGAAAGCTAGTTTCATTGAGGTCCCCGATCCAGATGAGGAATTAGGCTTCCACCAAAGGCAGTACAGAATGATTATTAGAAGTGCAACTGGACCGATAAATCTGTACCTCTTGAACAAGCACGACCACAAGTTAGAGGATGTGAGTGTCCAACAGGCAGAGTCAATGGACCCATCGTGGAGTAGCAATCACTGCAGAACGGAGGGTGTCGGGTTATCAGAAAGCCAAGGTTATCAGAAAAACCCTTCTGGGAGTTTAAGTTCACATGGCTCAGAGGCTTTTGGAATTCAACAAATTACTCCTACGAATTTAGATGTTGATGGTGACTATTGGTTTCAATCAGATCCTGAAGTTGGCTTAACACAATTGTGGGGGTAG 1140 0.4088 MSTPGEDQIHHFSPFKFDLLHHSPNASHLNPFTPMLPLNQRNGINNVNLHASNVEVFPSQSNTVNLPPLLQIETNQRGKHNGKSKVSRNSKSAASQMTNGESANAAAVNNCRYDSSLGLLTKKFVSLIQNAKDGTLDLNKTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCDGIGPRELEDQVNTLKAEVESLYAEEFKLEECISERKELLRNLEEGENTGKYLFLTKEDILTLPCFQNKQLIAVKAPKASFIEVPDPDEELGFHQRQYRMIIRSATGPINLYLLNKHDHKLEDVSVQQAESMDPSWSSNHCRTEGVGLSESQGYQKNPSGSLSSHGSEAFGIQQITPTNLDVDGDYWFQSDPEVGLTQLWG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00590 379 Gene3D - 107 179 IPR036388 -
Vivi3g00590 379 Pfam E2F/DP family winged-helix DNA-binding domain 114 177 IPR003316 GO:0005667|GO:0006355
Vivi3g00590 379 Pfam E2F transcription factor CC-MB domain 193 292 IPR032198 GO:0046983
Vivi3g00590 379 Gene3D - 184 295 - -
Vivi3g00590 379 MobiDBLite consensus disorder prediction 75 99 - -
Vivi3g00590 379 Coils Coil 207 227 - -
Vivi3g00590 379 SUPERFAMILY E2F-DP heterodimerization region 188 294 IPR037241 -
Vivi3g00590 379 MobiDBLite consensus disorder prediction 306 345 - -
Vivi3g00590 379 SUPERFAMILY "Winged helix" DNA-binding domain 112 175 IPR036390 -
Vivi3g00590 379 MobiDBLite consensus disorder prediction 303 345 - -
Vivi3g00590 379 SMART E2F_TDP_2 112 177 IPR003316 GO:0005667|GO:0006355
Vivi3g00590 379 FunFam E2F transcription factor 1 106 179 - -
Vivi3g00590 379 PANTHER TRANSCRIPTION FACTOR E2F 72 378 IPR015633 GO:0000978|GO:0006357
Vivi3g00590 379 CDD E2F_DD 188 295 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00590 Vivi-Chr3 9815489 9820262 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00590 2 378 E2F-DP Transcription Factor Family AT1G47870 43.029 9.51e-97 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vivi3g00590 E2F_CC-MB 9.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00590 K06620 - gmx:100797301 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00590 3 9815489 9820262 Vivi3g00590 3 9815489 9820262 ECH