Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00563 ATGGCGGAAGAAATTAGACAAAACGACGTCGCTTCATCTTCCAAATCTAGAAGCTTCTGGTCTTCACTCCGTTGGATTCCCACTTCTACCGATCACATCATCGCTGCCGAGAAACGCCTTCTCTCCATTATCAAGACTGGGCATGTTCAAGAGCGTGTTAATATAGGCTCTGGACCTCCTGGATCCAAAGTAAGATGGTTCCGGTCATCAAGCGATGAGCCGCGGTTTATCAACACGGTTACTTTTGATAGTAAACCTGATTCGCCTACGCTTGTTATGGTTCATGGATATGCGGCTTCTCAGGGTTTCTTCTTTCGGAATTTTGATGCTCTCGCTTCTCGTTTCAGAATCATTGCTGTTGATCAACTTGGTTGGGGTGGATCAAGCAGGCCTGATTTCACATGCAAAAGTACTGAAGAAACTGAGGCGTGGTTCATTGATTCTTTTGAGGAGTGGAGAAAAGCCAAAAATCTGAGCAATTTCATACTACTTGGACATTCATTTGGTGGCTATGTTGCTGCCAAATATGCGCTCAAGCACCCTGAGCATGTACAACACTTAATTTTGGTGGGACCAGCTGGGTTTACGTCAGAATCAGATGCGAAGACTGATTTTATTGCAAAGTTTCGAGCAACATGGAAGGGAGCAGTTCTGAACCGTCTATGGGAATCTAATTTTACGCCTCAAAAGATTGTCAGAGGTTTAGGTCCTTGGGGTCCAAACATGGTTCGCAAATATACAAGTGCTAGGTTTGGGACACATTCGACCGGGCAAAAACTGTTTGAAGAGGAATCCAGTTTGCTAACAGATTATGTTTATCATACATTGGCGGCCAAAGCTAGTGGTGAGCTGTGTTTAAAATATATTTTTGCCTTTGGAGCATTTGCTAGGATGCCCCTTCTTCACAGTGCTCCAGATTGGAAGGTGCCGACCACATTCATATATGGTTATGAAGATTGGATGGATTATGAAGGTGCCCAAAAAGCTCGCGCGCAAATGAAAGTTCCATGTGAAATTATCAGGGTCCCTCAGGCCGGACATTTTGTGTTCATTGACAACCCAAGTGGCTTCCATTCAGCTGTGTTTCATGCTTGTCGTAGGTTTCTTAGACCTGATCCGGACAATGAATCTCTTCCTGAAGGGCTATCCTCTGCATAG 1158 0.4456 MAEEIRQNDVASSSKSRSFWSSLRWIPTSTDHIIAAEKRLLSIIKTGHVQERVNIGSGPPGSKVRWFRSSSDEPRFINTVTFDSKPDSPTLVMVHGYAASQGFFFRNFDALASRFRIIAVDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFTSESDAKTDFIAKFRATWKGAVLNRLWESNFTPQKIVRGLGPWGPNMVRKYTSARFGTHSTGQKLFEEESSLLTDYVYHTLAAKASGELCLKYIFAFGAFARMPLLHSAPDWKVPTTFIYGYEDWMDYEGAQKARAQMKVPCEIIRVPQAGHFVFIDNPSGFHSAVFHACRRFLRPDPDNESLPEGLSSA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00563 385 Gene3D alpha/beta hydrolase 75 369 IPR029058 -
Vivi3g00563 385 Pfam alpha/beta hydrolase fold 89 354 IPR000073 -
Vivi3g00563 385 FunFam Probable 1-acylglycerol-3-phosphate O-acyltransferase 75 365 - -
Vivi3g00563 385 PRINTS Alpha/beta hydrolase fold signature 114 129 IPR000073 -
Vivi3g00563 385 PRINTS Alpha/beta hydrolase fold signature 177 190 IPR000073 -
Vivi3g00563 385 PRINTS Alpha/beta hydrolase fold signature 163 176 IPR000073 -
Vivi3g00563 385 PANTHER RE40534P-RELATED 22 362 - -
Vivi3g00563 385 PRINTS Epoxide hydrolase signature 309 325 IPR000639 GO:0003824
Vivi3g00563 385 PRINTS Epoxide hydrolase signature 342 364 IPR000639 GO:0003824
Vivi3g00563 385 PRINTS Epoxide hydrolase signature 177 190 IPR000639 GO:0003824
Vivi3g00563 385 PRINTS Epoxide hydrolase signature 114 129 IPR000639 GO:0003824
Vivi3g00563 385 SUPERFAMILY alpha/beta-Hydrolases 79 361 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00563 Vivi-Chr3 9419666 9423532 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00563 69 196 Acyl Lipid Metabolism Gene Families AT1G64670 32.117 3.64e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00563 - - gmx:100791981 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00563 3 9419666 9423532 Vivi3g00563 3 9419666 9423532 ECH
Vivi4g05864 4 195305210 195310934 Vivi3g00563 3 9419666 9423532 PCT