Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00547 ATGGCAACAACGGCTATATTTCTCACCATTGCATCCCTCACATACTTCACCACCATACTCATAACACATGCTTCAACAACAACAAACAACGAAATCCAAGCCTTAACAACCTTCAAAAACAACCTCCTCGACCCACTCAACTCCTTAACATCTTGGAACACATCAACACCATCACCACCATGCGACTGGCACGGTATTCTCTGTTCCAACAACAGAGTCCACCAAATACGCTTACCTCGTCTTCAACTATCTGGCTCCATCTCTTCATCACTCTCCAACCTCACACAACTCCGCAAACTAAGTCTCCATTCCAACAACCTCATCTCCTCAATACCTCCCTCTCTCTCACAATGTCTCTTCCTCCGCGCCATTTATCTTCACAACAACTCCCTCTCCGGTAACATACCTCCATCGCTTCTCAACCTCACCAACCTTCAGGTTCTTAACTTTGCTGGTAACTTTCTCTCCGGCACCATCCCAAACCGTCTCTCTAACTCCCTACGCTTCCTCGACCTCTCCTCGAACTCGTTCTCCGGTGACATTCCGGGGAACTTTTCCTCCAAGTCCCAGCTTCAACTCATCAACCTCTCACACAATGATTTCACCGGTCAAATACCTGTTACAGTTGGAGCTTTACAACAGCTGGAATATCTGTGGTTAGACAACAACCATCTCCGTGGAACATTACCTTCTGCTATATCGAACTGTTCCTCTATGGTGCACCTGAGCGTAGAGGATAACTCCATTGGCGGGTTGATACCTTCTACGGTTGGGACAATGCCGAAGCTTCAAGTGCTGTCACTTTCCAAGAATCAACTTTCTGGTTTTGTCCCCACAACCCTCTTTTGCAATGAAGACAACAATAACAAAAACAATACTAATATTAGAATTGTTCAGCTTGGATTTAATATGTTCACGGGTGTTTCGAATCCGAGAAATGGAAAATGTGATAATAATTTTTTGGAGATTCTAGACCTTAAAGAGAATCACATTATTCACACTTTGTTTCCTTCTTGGTTGACCAATGTGAAATCTTTGAGGACTCTTGATCTCTCTGGGAACTCTTTTTCAGGCTATCTGCCTCAAGAAATTGGAGATCTTTTCTTGTTGGAAGAGTTAAGAATTTCGGATAATTTGTTATCTGGCGTTGTTCCGAGTAGTATTGTGAAATGTAGGTTGTTGAAGGTTCTTGATCTCCGAAGGAATCGGCTCTCGGGTCTTATTCCTTATTTCCTCGGAGAGTTGAAGAGTTTGAAGGAGTTATCTCTTGGTGGTAACTTTTTTACTGGTTTAATTCCAAAGAGTTATGGAGTTCTTTCTGAATTAGAGATTTTGGATTTAAGCAACAATAAACTGAATGGGGTTTTGCCTTTGGAGATTATGCAGTTAGGAAACTTGGGTGTTTTGAATCTCAGCAACAATAGATTCTCTGGTGGAATCTCGTCTCGAATTGGAGACTTAACGGCTTTGCAAGTTCTTAATTTGAGTCAATGTGGTTTTTCTGGTAGTGTTCCAGCTACGCTTGGGAGTTTGATGAAACTGAGGGTGTTGGATTTAAGCAAACAAAACCTTTCAGGTGAGATACCAGTTGAGGTTTTCGGATTACCGAGTTTGGAAGTTGTGGCTCTTGATGGAAACAGTTTGAGTGGTTCTGTTCCTGAGGGTTTCAGCAGCATTGCAAGTTTACGGTATCTTAATCTTAGTTCCAATGATTTCGTTGGCAACATTCCAACAACTTATGGTTATCTAAGTTCCTTAGTTGTTCTTTCTTTGTCTCACAATTTCATTTCTGATTCAATACCTAATGAGATTGGTGGTTGTTCTCAACTAGAAGTGCTTCAGCTTCAATCAAATCGGTTAGTAGGTAACGTTGTTCCGAGTGTTATCTCTCACCTTTCTCGTTTAAAGGAGCTGAATTTAGGTAACAATGGAATCAAAGGTGAAATCCCAGACGAGATTTCAAAGTGTTCTGCTTTGAACTCACTTGATTTAAGTGGTAATCACTTAACCGGTAACATACCGCAATCCTTGTCGAAGTTATCAAATTTGAAGGCTTTGAATCTGTCTTCAAATCAATTGACAGGAGAAATTCCGGTTGATCTTTCGCGCATATCCGGTTTGAAGTATTTAAATGTTTCCAACAACAACCTCGAGGGCGAGATTCCACAAATGCTGAGTTCTAGATTCAATGACCCTTCTGCGTTTGCAACGAACAGGAGGTTATGTGGGAAACCATTGCATAGAGATTGTACAAAAACGAGATGGCTAAAGAGAAAAAGACTAATAATCATCATAGGTGTTGCAGTTGCAGGACTATGCTTTCTAGCATTGTTTTGCTGTGGCTATGTTTACAGTCTCTTAAGGTGGCGAAATAAGCTTCGAGAAGGAGTAACAGGCGAGAAGAAACGTAGCTCAACAAGTGCAGGCTCAAATGGAGACAGAAACAGTAGAGGAAGTGGCGAAAACGGAGGGCCAAAATTAATAGTCTTCAACAACAAAATCACATACGCCGAAACACTAGAAGCAACAAGAAACTTCGATGAAGAAAACGTTCTAAGCCGAGGAAAACACGGACTTGTTTTCAAAGCCTCGTATCAAGATGGAATGGTTCTATCAATTCGTAGACTTCCAAACGGGTCAACATTGATCGAAGAAAACACATTCCGCAAAGAAGCAGAATCATTAGGCAAAGTTAAGCACCGAAACCTAACAGTCCTACGTGGCTATTATGCAGGACCACCACCTGATGTAAGACTACTAGTTTACGATTACATGCCAAATGGAAATCTAGGTACATTGCTTCAAGAAGCTTCACAACAAGACGGTCATGTTTTGAATTGGCCAATGCGTCATTTAATCGCACTAGGCATTGCTCGCGGATTGGGTTTTCTACACTCTGTCGAAATTGTTCATGGCGATGTTAAACCACAAAACGTTCTTTTTGACGCTGATTTTGAAGCACATTTATCCGAATTCGGGCTAGACCGGTTAACAAAGGTTAGTGTCCCAACTGAATTAGCAGAGTCGTCCTCTTCAACTACAATTACAGTCGGTTCGTTGGGCTACGTCGCGCCAGAAGCCGTGTTAACCGGACAAGTGACAAAGGAAGGAGACATATACAGTTTCGGGATAGTGTTGTTGGAGATATTGACAGGAAGAAAAGCTGTTATGTTTACTGGCCAAGACGAAGATATAGTGAAATGGGTGAAGAAACAGTTACAAAAAGGCTTGATATCAGAACTGTTGGAACCTGGTTTGCTTGAGATTGATCAAGAATCATCAGAATGGGAAGAGTTTTTGTTAGGTGTTAAGGTTGCACTTCTTTGCACAGCACATGATCCTCTTGATCGACCTTCTATTAATGATATTGTTTTCATGCTTGAAGGCTGTCGTGTTGGACCTGATATACCTTCCTCTGCTGATCCAACCACACTACCTTCACCTGTTTCTTGA 3453 0.4173 MATTAIFLTIASLTYFTTILITHASTTTNNEIQALTTFKNNLLDPLNSLTSWNTSTPSPPCDWHGILCSNNRVHQIRLPRLQLSGSISSSLSNLTQLRKLSLHSNNLISSIPPSLSQCLFLRAIYLHNNSLSGNIPPSLLNLTNLQVLNFAGNFLSGTIPNRLSNSLRFLDLSSNSFSGDIPGNFSSKSQLQLINLSHNDFTGQIPVTVGALQQLEYLWLDNNHLRGTLPSAISNCSSMVHLSVEDNSIGGLIPSTVGTMPKLQVLSLSKNQLSGFVPTTLFCNEDNNNKNNTNIRIVQLGFNMFTGVSNPRNGKCDNNFLEILDLKENHIIHTLFPSWLTNVKSLRTLDLSGNSFSGYLPQEIGDLFLLEELRISDNLLSGVVPSSIVKCRLLKVLDLRRNRLSGLIPYFLGELKSLKELSLGGNFFTGLIPKSYGVLSELEILDLSNNKLNGVLPLEIMQLGNLGVLNLSNNRFSGGISSRIGDLTALQVLNLSQCGFSGSVPATLGSLMKLRVLDLSKQNLSGEIPVEVFGLPSLEVVALDGNSLSGSVPEGFSSIASLRYLNLSSNDFVGNIPTTYGYLSSLVVLSLSHNFISDSIPNEIGGCSQLEVLQLQSNRLVGNVVPSVISHLSRLKELNLGNNGIKGEIPDEISKCSALNSLDLSGNHLTGNIPQSLSKLSNLKALNLSSNQLTGEIPVDLSRISGLKYLNVSNNNLEGEIPQMLSSRFNDPSAFATNRRLCGKPLHRDCTKTRWLKRKRLIIIIGVAVAGLCFLALFCCGYVYSLLRWRNKLREGVTGEKKRSSTSAGSNGDRNSRGSGENGGPKLIVFNNKITYAETLEATRNFDEENVLSRGKHGLVFKASYQDGMVLSIRRLPNGSTLIEENTFRKEAESLGKVKHRNLTVLRGYYAGPPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLGFLHSVEIVHGDVKPQNVLFDADFEAHLSEFGLDRLTKVSVPTELAESSSSTTITVGSLGYVAPEAVLTGQVTKEGDIYSFGIVLLEILTGRKAVMFTGQDEDIVKWVKKQLQKGLISELLEPGLLEIDQESSEWEEFLLGVKVALLCTAHDPLDRPSINDIVFMLEGCRVGPDIPSSADPTTLPSPVS 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00547 1150 Gene3D Ribonuclease Inhibitor 577 625 IPR032675 -
Vivi3g00547 1150 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 206 308 - -
Vivi3g00547 1150 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 473 754 - -
Vivi3g00547 1150 Pfam Protein kinase domain 848 1123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00547 1150 SUPERFAMILY Protein kinase-like (PK-like) 826 1138 IPR011009 -
Vivi3g00547 1150 SUPERFAMILY L domain-like 437 722 - -
Vivi3g00547 1150 Gene3D Ribonuclease Inhibitor 290 481 IPR032675 -
Vivi3g00547 1150 ProSiteProfiles Leucine-rich repeat profile. 441 462 IPR001611 GO:0005515
Vivi3g00547 1150 Gene3D Ribonuclease Inhibitor 626 752 IPR032675 -
Vivi3g00547 1150 ProSiteProfiles Protein kinase domain profile. 846 1136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00547 1150 Pfam Leucine Rich repeat 680 696 IPR001611 GO:0005515
Vivi3g00547 1150 Gene3D Ribonuclease Inhibitor 186 289 IPR032675 -
Vivi3g00547 1150 Gene3D Ribonuclease Inhibitor 27 185 IPR032675 -
Vivi3g00547 1150 SMART serkin_6 846 1126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00547 1150 MobiDBLite consensus disorder prediction 802 818 - -
Vivi3g00547 1150 SMART LRR_sd22_2 212 238 - -
Vivi3g00547 1150 SMART LRR_sd22_2 94 113 - -
Vivi3g00547 1150 SMART LRR_sd22_2 415 436 - -
Vivi3g00547 1150 SMART LRR_sd22_2 632 655 - -
Vivi3g00547 1150 SMART LRR_sd22_2 260 287 - -
Vivi3g00547 1150 SMART LRR_sd22_2 680 701 - -
Vivi3g00547 1150 SMART LRR_sd22_2 583 602 - -
Vivi3g00547 1150 SMART LRR_sd22_2 439 460 - -
Vivi3g00547 1150 ProSitePatterns Serine/Threonine protein kinases active-site signature. 969 981 IPR008271 GO:0004672|GO:0006468
Vivi3g00547 1150 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 370 1129 - -
Vivi3g00547 1150 FunFam Putative LRR receptor-like serine/threonine-protein kinase 810 924 - -
Vivi3g00547 1150 MobiDBLite consensus disorder prediction 798 824 - -
Vivi3g00547 1150 SMART LRR_typ_2 260 283 IPR003591 -
Vivi3g00547 1150 SMART LRR_typ_2 439 462 IPR003591 -
Vivi3g00547 1150 SMART LRR_typ_2 583 607 IPR003591 -
Vivi3g00547 1150 SMART LRR_typ_2 463 487 IPR003591 -
Vivi3g00547 1150 SMART LRR_typ_2 142 166 IPR003591 -
Vivi3g00547 1150 SMART LRR_typ_2 680 704 IPR003591 -
Vivi3g00547 1150 SMART LRR_typ_2 415 438 IPR003591 -
Vivi3g00547 1150 SMART LRR_typ_2 343 367 IPR003591 -
Vivi3g00547 1150 SMART LRR_typ_2 212 236 IPR003591 -
Vivi3g00547 1150 SMART LRR_typ_2 535 558 IPR003591 -
Vivi3g00547 1150 SMART LRR_typ_2 94 118 IPR003591 -
Vivi3g00547 1150 SMART LRR_typ_2 632 656 IPR003591 -
Vivi3g00547 1150 Gene3D Ribonuclease Inhibitor 482 576 IPR032675 -
Vivi3g00547 1150 SUPERFAMILY L domain-like 291 452 - -
Vivi3g00547 1150 Gene3D Transferase(Phosphotransferase) domain 1 925 1134 - -
Vivi3g00547 1150 PRINTS Leucine-rich repeat signature 680 693 - -
Vivi3g00547 1150 PRINTS Leucine-rich repeat signature 442 455 - -
Vivi3g00547 1150 FunFam Leucine-rich repeat receptor protein kinase EMS1 336 435 - -
Vivi3g00547 1150 Pfam Leucine rich repeat 626 669 IPR001611 GO:0005515
Vivi3g00547 1150 Pfam Leucine rich repeat 321 380 IPR001611 GO:0005515
Vivi3g00547 1150 Pfam Leucine rich repeat 513 572 IPR001611 GO:0005515
Vivi3g00547 1150 Pfam Leucine rich repeat 393 452 IPR001611 GO:0005515
Vivi3g00547 1150 Pfam Leucine rich repeat 166 225 IPR001611 GO:0005515
Vivi3g00547 1150 Gene3D Phosphorylase Kinase; domain 1 822 924 - -
Vivi3g00547 1150 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Vivi3g00547 1150 SUPERFAMILY L domain-like 27 328 - -
Vivi3g00547 1150 ProSiteProfiles Leucine-rich repeat profile. 96 118 IPR001611 GO:0005515
Vivi3g00547 1150 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 28 187 - -
Vivi3g00547 1150 Pfam Leucine Rich Repeat 707 725 IPR001611 GO:0005515
Vivi3g00547 1150 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 925 1135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00547 Vivi-Chr3 9189281 9193473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00547 13 1149 Receptor kinase-like Gene Family AT4G36180 61.217 0.0 1278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Vivi3g00547 Pkinase 4.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00547 - - gmx:100801571 1576.99