Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00541 ATGAAGATCCAGTGCGACGTGTGTAACAAAATGCAAGCTTCACTATTCTGCACCGCCGACGAAGCGGCCTTATGCTCCGCCTGCGACCACCGTGTCCACCATGCTAACAAGCTCGCCTCCAAACACCACCGCTTCTCTCTCAACCATGCTAATTCTCCCAACAACTTTCCTCTCTGCGATATTTGCCTCGAAAGAAGAGGTTTTGTGTTTTGTCAACAAGATAGAGCCATTGTATGCAAAGAGTGTGATTTCAAGAATCATTGTTCCAATGAACATACAAAGAAGCATAGTAGGTTTCTTCTCAGTGGGATTAAGCTTCTCTCTCCAGCTTCTATATCACCACCACCACTACCATTCTCTCCTGCTCCTCCCATTCCAGCTTTCAACAAGGTGGCTTCAAATGAAGAAACTGGTACTGGTTTCACCATATCTGAGTACTTGATAAACACTATACCGGGTTGGAAGTTTGAAGAGTTCTTCGATTCTCCTTCTTCTGTTCCCTTTGATCAATTTCAGAATCATGTTGCTGAAGTTAATGCTGATAGTGATCCGGAAAATATGGTTTCTTTCTTGGGTGGGATTAGGGTTCCTCAAGCACCAACTTCTTCTCTTTATTATGCTTCAAAAATGGATAACAGATCATCATCAGACACAAACATCAAATTATTCAGCAGCAGCAGCAGTTTGAGGGATGATAATAATTTCACAGTTCCACAGATGATAAACCCTCCTAATTAA 738 0.4241 MKIQCDVCNKMQASLFCTADEAALCSACDHRVHHANKLASKHHRFSLNHANSPNNFPLCDICLERRGFVFCQQDRAIVCKECDFKNHCSNEHTKKHSRFLLSGIKLLSPASISPPPLPFSPAPPIPAFNKVASNEETGTGFTISEYLINTIPGWKFEEFFDSPSSVPFDQFQNHVAEVNADSDPENMVSFLGGIRVPQAPTSSLYYASKMDNRSSSDTNIKLFSSSSSLRDDNNFTVPQMINPPN 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00541 245 Gene3D Classic Zinc Finger 1 98 - -
Vivi3g00541 245 CDD Bbox1_BBX-like 5 47 - -
Vivi3g00541 245 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 240 - -
Vivi3g00541 245 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vivi3g00541 245 CDD Bbox1_BBX-like 58 101 - -
Vivi3g00541 245 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
Vivi3g00541 245 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vivi3g00541 245 SMART bboxneu5 54 101 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00541 Vivi-Chr3 9132465 9134083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00541 1 162 C2C2-CO-like Transcription Factor Family AT1G75540 51.515 5.19e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi3g00541 zf-B_box 3.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00541 - - tpra:123898686 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00541 3 9132465 9134083 Vivi3g00541 3 9132465 9134083 ECH
Vivi4g05861 4 195269058 195270698 Vivi3g00541 3 9132465 9134083 PCT