Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00536 ATGTCTAGGTTTTTTTCTCTAGGTCAAAAACAATATACTAGCAGTAGTAACGAAGAGATCTTAGAGATATGGCAACAACAAAGCTTGAAGAACTACAGTGTGTTTGGAGTGGCTCCTAAAACCTGTTCATTTGATGAGTGTGGAGGAAAATTCACGATGATGATGAGACGGAACGGAGGAACAAATTGTCAAGACTGTGGGAATCAAGCGAAGAAAGACTGTACACATCTAAGATGTAGAACTTGTTGTAAGAGTCGAGGGTTTCAGTGTCAAACACATGTCAAGAGTACTTGGGTTCCAGCTTCTAAACGCCGTGAACGACAGCAACATCTATCTATGTTGCAACAGCACCAACCGTTTCGTCGAAGAGATCATGGAGAGAGCTATAAGTATCATCGACATGTGGATAATCAAGATGGTGCAGGTTCTTCTCTTCCATGTCCTCAACCACCTAACCCTACCGCAGGGTTTGAGTTGGGACAGTTTCCAGCTGAAGTGAGTTCTGCATCAGTAACGTTTCGGTGTGTGAGAGTGAGTTCATTGGACGGTCCAGAGGAGCAGTGTGCGTATCAAACGGCTGTGAGCATAGGAGGACATGTTTTCAAAGGAGTTCTCTATGATCAAGGTCCTTCTCCTTCAAGTCTTTACACCAGTAGTACTATTGCACCTATGGAAGGTTCTTCAGGTGGAGGTCATCATCAACCTCAACAACCTCAACAACTTGATTTCTTGACAACTGCAACCGCATCTGCAACCACAACCACTGGTATCTCGTTTGATCCTTCACTTTACTCGGCTCCGCTACATGCTTTCATGGCCGGTACACAATTTTTCCACCCCCAACATCCTAATTAA 855 0.4421 MSRFFSLGQKQYTSSSNEEILEIWQQQSLKNYSVFGVAPKTCSFDECGGKFTMMMRRNGGTNCQDCGNQAKKDCTHLRCRTCCKSRGFQCQTHVKSTWVPASKRRERQQHLSMLQQHQPFRRRDHGESYKYHRHVDNQDGAGSSLPCPQPPNPTAGFELGQFPAEVSSASVTFRCVRVSSLDGPEEQCAYQTAVSIGGHVFKGVLYDQGPSPSSLYTSSTIAPMEGSSGGGHHQPQQPQQLDFLTTATASATTTTGISFDPSLYSAPLHAFMAGTQFFHPQHPN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00536 284 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 13 268 IPR007818 GO:0003700|GO:0006355
Vivi3g00536 284 MobiDBLite consensus disorder prediction 218 237 - -
Vivi3g00536 284 NCBIfam putative zinc finger domain, LRP1 type 62 104 IPR006510 -
Vivi3g00536 284 Pfam Domain of unknown function (DUF702) 60 210 - -
Vivi3g00536 284 NCBIfam LRP1 C-terminal domain 161 210 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00536 Vivi-Chr3 9050673 9052027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00536 61 278 C2H2 Transcription Factor Family AT3G51060 53.478 2.72e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vivi3g00536 DUF702 2e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00536 - - psat:127083804 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00536 3 9050673 9052027 Vivi2g02978 2 128497666 128499872 ECH
Vivi3g00536 3 9050673 9052027 Vivi3g00536 3 9050673 9052027 ECH
Vivi4g05860 4 195182975 195184918 Vivi3g00536 3 9050673 9052027 PCT