Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00508 ATGGCTTCTTCCGGCGTAAATTCCGGAAATTCTTCTGCATCTATGAAATTTGGAAGTTCTGGATCTGAGAAGGATGTGAACAATCTGATGGATGAGAGAAAAAACAAGAGGAAACAATCGAATCGGGAATCGGCGAAGAGATCTAGGATGAGGAAGCAGAAACATGTTGATGATATGATGAATCAGGTATCTGAGCTCACAAAAGACAATAGTGAGATTGTGAATAAGATAAATATCACAACACAGCACTATTTGAATGTTGAGGCTGAAAATTCAATTTTGAGGGCCCAAATAGGTGAGCTTAGTCAAAGGTTTCAATCATTGAATAACATCATTGAACTCATCAACACAAACAACACTAGTAATGGGTCCTATGATTCAAGGGATTGTTATGAAACAAGTGGTGCACAAAACATGATGAATTTGATGATGTATAATAATAACCTGCCCATTACTACAACTTCTGCACATGTTTTTAAGTGGTGA 486 0.3704 MASSGVNSGNSSASMKFGSSGSEKDVNNLMDERKNKRKQSNRESAKRSRMRKQKHVDDMMNQVSELTKDNSEIVNKINITTQHYLNVEAENSILRAQIGELSQRFQSLNNIIELINTNNTSNGSYDSRDCYETSGAQNMMNLMMYNNNLPITTTSAHVFKW 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00508 161 CDD bZIP_plant_GBF1 34 84 IPR045314 GO:0003700|GO:0006355
Vivi3g00508 161 SMART brlzneu 29 93 IPR004827 GO:0003700|GO:0006355
Vivi3g00508 161 SUPERFAMILY Leucine zipper domain 33 85 IPR046347 GO:0003700|GO:0006355
Vivi3g00508 161 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 31 94 IPR004827 GO:0003700|GO:0006355
Vivi3g00508 161 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 36 51 IPR004827 GO:0003700|GO:0006355
Vivi3g00508 161 Pfam bZIP transcription factor 33 84 IPR004827 GO:0003700|GO:0006355
Vivi3g00508 161 Gene3D - 31 85 - -
Vivi3g00508 161 FunFam BZIP transcription factor 31 83 - -
Vivi3g00508 161 PANTHER BZIP TRANSCRIPTION FACTOR 44 13 139 - -
Vivi3g00508 161 MobiDBLite consensus disorder prediction 1 57 - -
Vivi3g00508 161 MobiDBLite consensus disorder prediction 1 25 - -
Vivi3g00508 161 Coils Coil 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00508 Vivi-Chr3 8704436 8705859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00508 29 117 bZIP Transcription Factor Family AT4G34590 62.921 3.12e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi3g00508 bZIP_1 8.1e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00508 K25786 - tcc:18591443 154.836