Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00506 ATGGCAACTCCGGTCGAGCCTCCGAACGGGATAAGGGCGGAAGGGAAGCATTATTATTCCATGTGGCAGACGCTATTTGAGATCGACACTAAATATGTGCCGATTAAGCCGATTGGCCGGGGAGCATATGGGATTGTGTGTTCTTCTGTTAATAGGGAGACAAATGAGAAAGTTGCGATCAAGAAGATACAGAACGCGTTTGAGAATCGTGTTGATGCGCTTAGGACTTTGCGGGAGCTTAAATTGCTTCGACATCTTCATCATGAGAATGTTATTGCTTTGAAGGATATTATGATGCCTGTTAATAGGAGTAGTTTTAAGGATGTTTATCTTGTTTATGAACTCATGGATACCGATTTGCATCAGATTGTTAAATCTTCTCAAACGTTGTCTAATGATCACTGCCAATATTTCCTCTTTCAGTTGCTTCGGGGTTTGAAATATCTACACTCAGCTAACATCCTTCATCGCGACTTGAAACCTGGAAATCTTCTAATTAATGCAAATTGTGATCTAAAAATATGTGATTTTGGGTTAGCTCGCACAAACTGCAGCAAGAACCAGTTCATGACGGAGTATGTTGTCACTCGGTGGTATAGGGCACCAGAGCTTCTACTTTGCTGTGACAACTATGGGACATCTATTGACGTATGGTCAGTTGGATGCATCTTTGCAGAGCTCCTTGGACGAAAACCTATTTTCCCTGGTTCAGAGTGTCTCAACCAACTAAAGCTTATTATCAATATCCTTGGTAGTCAAAGGGAGGAGGATATCGAATTTATTGATAATCCTAAAGCAAAGAGGTACATCAAATCACTTCCATATTCTCCCGGAACCCCCTTTTCCAGACTTTACCCTAATGCACATCCCCTTGCAATTGATCTGCTAGCTAAGATGCTTGTTTTTGATCCCACAAAGAGGATTAGTGTTATGGAAGCACTTCAACACCCATTCATGGCCTCTCTCTATGATCCTAATTGTGATCCTCCAGCCATCATTCCAATTGATCTTGACATTGATGAGGATCTAGGGGAGGAGATGATAAGGGAGTTGATGTGGAATGAAATGGTTCATTACCATCCCGGATCTGCTATGGGAAATGCAGCGTTGTCGGCTTGA 1119 0.4218 MATPVEPPNGIRAEGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKKIQNAFENRVDALRTLRELKLLRHLHHENVIALKDIMMPVNRSSFKDVYLVYELMDTDLHQIVKSSQTLSNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARTNCSKNQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGSECLNQLKLIINILGSQREEDIEFIDNPKAKRYIKSLPYSPGTPFSRLYPNAHPLAIDLLAKMLVFDPTKRISVMEALQHPFMASLYDPNCDPPAIIPIDLDIDEDLGEEMIRELMWNEMVHYHPGSAMGNAALSA 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00506 372 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Vivi3g00506 372 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 31 320 - -
Vivi3g00506 372 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
Vivi3g00506 372 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00506 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Vivi3g00506 372 CDD STKc_TEY_MAPK 26 361 - -
Vivi3g00506 372 FunFam Mitogen-activated protein kinase 18 125 - -
Vivi3g00506 372 FunFam Mitogen-activated protein kinase 116 345 - -
Vivi3g00506 372 SUPERFAMILY Protein kinase-like (PK-like) 24 326 IPR011009 -
Vivi3g00506 372 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vivi3g00506 372 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Vivi3g00506 372 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00506 372 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00506 Vivi-Chr3 8683672 8686221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00506 1 370 MAP Kinase Gene Family AT1G10210 84.595 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vivi3g00506 Pkinase 3.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00506 K20535 - gmx:100798863 704.901