Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00500 ATGATTATGGAATCTAGAAATCTCCATCATCTTCAAGACCAACAACCTCCTCCTCTTTCTTCTTTATCTTCTTCTATTCCATCATCTTATGCTGTTGGAGGAGGAACCACCACCATCCACTCTTGGACCCCAACAAACATCACTTTGAATAATGCTGAAGGTAACTTCAACTCAAACCTCCATGAAGTTAATCCGAGATATTCGAGATCAAATGCGATGATTCAAGATTTAGGTTATCATCATCAATGGACTAGTGATGATGTTAACAGAAACCATGAGTCAGATTCTACTAAGGAAGAGATTTCTTTTACTAATTTCCCTAAATTTACTGAAATGCTTAATTACACTCCTCCTAATTCAAGCATGGAGAACTATGGAGTACTCGATGATTCGTCCGCTACGATAAATATGAAGAATTGTACTAATGATGAACACAAGGATATGAATGCTCTCATGCTCAAAAATCTTTACACTGGTGGAGAGTTCTATAATGCTCAAAATTATCCTAACATTGGTAGCCAGATTCACCCTAGTATAAACATCTCGAACATGAATCCATACTCGTCTTCGTCTTCAACCACAACTTTGGATATGAACATGCAGTCATTAGATCTATTAACTAGTTCACAAGATCATCATCTTGGTAGATTTACAACTAATGATCATGAAAACCTTTCTTTTCATCTTCATCCGATGCAGAACCAACTCGCGAACCGATCCTCTTCTAGTAACTCCATTAATAAGCCGTCGCTACTCAACAATGGTGGTGGAGAAACTAAGAGAGTGATGCAATCAAAGGCTTCTCAATCTGAAACCGCATTGAAGAAATCGCGATCTTCATCAGAATCTAAACCTTCGTGTGCACCCTTTAAGGTTAGGAAAGAGAAATTAGGCGATAGGATTGCGGCTCTTCAACAGTTAGTGGCTCCTTTTGGAAAGACTGACACTGCATCTGTACTCATGGAAGCTATTGGATACATTAAATTCCTTCAAGGCCAAGTCGAGACACTGAGTGTTCCTTATATGAAGTCAACGCAAAACCAAAACAACAGATTGATGCAAGGGGATTCAGCCATAGGTGACACAAATGGAGAACCAAAGCAGCAATATCTGAGAAGTCGAGGCCTGTGTCTCGTGCCATTGTCATGCATGTCATACATAGCCGGCGATGGCAGCACAGAGGTGTGGCAACAGCGCCCGAACTTTGGTGGACCGGCTTGA 1221 0.4062 MIMESRNLHHLQDQQPPPLSSLSSSIPSSYAVGGGTTTIHSWTPTNITLNNAEGNFNSNLHEVNPRYSRSNAMIQDLGYHHQWTSDDVNRNHESDSTKEEISFTNFPKFTEMLNYTPPNSSMENYGVLDDSSATINMKNCTNDEHKDMNALMLKNLYTGGEFYNAQNYPNIGSQIHPSINISNMNPYSSSSSTTTLDMNMQSLDLLTSSQDHHLGRFTTNDHENLSFHLHPMQNQLANRSSSSNSINKPSLLNNGGGETKRVMQSKASQSETALKKSRSSSESKPSCAPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQGQVETLSVPYMKSTQNQNNRLMQGDSAIGDTNGEPKQQYLRSRGLCLVPLSCMSYIAGDGSTEVWQQRPNFGGPA 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00500 406 MobiDBLite consensus disorder prediction 1 26 - -
Vivi3g00500 406 CDD bHLH_AtbHLH_like 289 338 IPR045239 -
Vivi3g00500 406 MobiDBLite consensus disorder prediction 235 291 - -
Vivi3g00500 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 343 IPR036638 GO:0046983
Vivi3g00500 406 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 149 385 - -
Vivi3g00500 406 MobiDBLite consensus disorder prediction 8 26 - -
Vivi3g00500 406 FunFam Transcription factor bHLH123 family 291 353 - -
Vivi3g00500 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 281 330 IPR011598 GO:0046983
Vivi3g00500 406 Gene3D - 291 359 IPR036638 GO:0046983
Vivi3g00500 406 MobiDBLite consensus disorder prediction 235 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00500 Vivi-Chr3 8585954 8588991 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00500 27 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 36.283 8.54e-52 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00500 - - mtr:25490216 498.049