Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00499 ATGATTATGGAATCTAGAAATCTCCATCATCTTCAAGACCAACAACCTCCTCCTCTTTCTTCTTTATCTTCTTCTATTCCATCATCTTATGCTGTTGGAGGAGGAACCACCACCATCCACTCTTGGACCCCAACAAACATCACTTTGAATAATGCTGAAGGTAACTTCAACTCAAACCTCCATGAAGTTAATCCGAGATATTCGAGATCAAATGCGATGATTCAAGATTTAGGTTATCATCATCAATGGACTAGTGATGATGTTAACAGAAACCATGAGTCAGATTCTACTAAGGAAGAGATTTCTTTTACTAATTTCCCTAAATTTACTGAAATGCTTAATTACACTCCTCCTAATTCAAGCATGGAGAACTATGGAGTACTCGATGATTCGTCCGCTACGATAAATATGAAGAATTGTACTAATGATGAACACAAGGATATGAATGCTCTCATGCTCAAAAATCTTTACACTGGTGGAGAGTTCTATAATGCTCAAAATTATCCTAACATTGGTAGCCAGATTCACCCTAGTATAAACATCTCGAACATGAATCCATACTCGTCTTCGTCTTCAACCACAACTTTGGATATGAACATGCAGTCATTAGATCTATTAACTAGTTCACAAGATCATCATCTTGGTAGATTTACAACTAATGATCATGAAAACCTTTCTTTTCATCTTCATCCGATGCAGAACCAACTCGCGAACCGATCCTCTTCTAGTAACTCCATTAATCCGTCGCTACTCAACAATGGTGGTGGAGAAACTAAGAGAGTGATGCAATCAAAGGCTTCTCAATCTGAAACCGCATTGAAGAAATCGCGATCTTCATCAGAATCTAAACCTTCGTGTGCACCCTTTAAGGTTAGGAAAGAGAAATTAGGCGATAGGATTGCGGCTCTTCAACAGTTAGTGGCTCCTTTTGGAAAGACTGACACTGCATCTGTACTCATGGAAGCTATTGGATACATTAAATTCCTTCAAGGCCAAGTCGAGACACTGAGTGTTCCTTATATGAAGTCAACGCAAAACCAAAACAACAGATTGATGCAAGGGGATTCAGCCATAGGTGACACAAATGGAGAACCAAAGCAGCAATATCTGAGAAGTCGAGGCCTGTGTCTCGTGCCATTGTCATGCATGTCATACATAGCCGGCGATGGCAGCACAGAGGTGTGGCAACAGCGCCCGAACTTTGGTGGACCGGCTTGA 1218 0.4064 MIMESRNLHHLQDQQPPPLSSLSSSIPSSYAVGGGTTTIHSWTPTNITLNNAEGNFNSNLHEVNPRYSRSNAMIQDLGYHHQWTSDDVNRNHESDSTKEEISFTNFPKFTEMLNYTPPNSSMENYGVLDDSSATINMKNCTNDEHKDMNALMLKNLYTGGEFYNAQNYPNIGSQIHPSINISNMNPYSSSSSTTTLDMNMQSLDLLTSSQDHHLGRFTTNDHENLSFHLHPMQNQLANRSSSSNSINPSLLNNGGGETKRVMQSKASQSETALKKSRSSSESKPSCAPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQGQVETLSVPYMKSTQNQNNRLMQGDSAIGDTNGEPKQQYLRSRGLCLVPLSCMSYIAGDGSTEVWQQRPNFGGPA 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00499 405 MobiDBLite consensus disorder prediction 235 285 - -
Vivi3g00499 405 MobiDBLite consensus disorder prediction 235 290 - -
Vivi3g00499 405 MobiDBLite consensus disorder prediction 1 26 - -
Vivi3g00499 405 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
Vivi3g00499 405 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 145 384 - -
Vivi3g00499 405 FunFam Transcription factor bHLH123 family 290 352 - -
Vivi3g00499 405 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 290 342 IPR036638 GO:0046983
Vivi3g00499 405 MobiDBLite consensus disorder prediction 8 26 - -
Vivi3g00499 405 CDD bHLH_AtbHLH_like 288 337 IPR045239 -
Vivi3g00499 405 Gene3D - 290 358 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00499 Vivi-Chr3 8585952 8588991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00499 25 403 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 36.504 9.94e-52 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00499 - - mtr:25490216 487.263