Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00489 ATGTCTAGGTTTTTTTCTCTAGGTCAAAAACAATATACCAGCAGTAGTAACGAAGAGATCTTAGAGATATGGCAACAACAAAGCTTGAAGAACTACAGTGTGTTTGGAGTGGCTCCTAAAACCTGTTCATTTGATGAGTGTGGAGGAAAATTCACGATGATGATGAGACGGAACGGAGGAACGAATTGTCAAGACTGTGGGAATCAAGCGAAGAAAGACTGTACACATCTAAGATGTAGAACTTGTTGTAAGAGTCGAGGGTTTCAGTGTCAAACTCATGTGAAGAGTACTTGGGTTCCAGCTTCTAAACGCCGTGAACGACAGCAACATCTATCTATGTTGCAACAGCACCAACCGTTTCGTCGAAGAGATCATGGAGAGAGCTATAAGTATAAACGACATATGGATAATCAAGATGGTGTAGGTTCTTCTCTTCCATGTCCTCAACCACCTAACCCTACCACAGGGTTTGAGTTGGGACAGTTTCCAGCTGAAGTGAGTTCTGCATCAGTAACGTTTCGGTGTGTGAGAGTGAGTTCATTGGACGGTCCAGATGAGCAGTGTGCGTATCAAACGGCTGTGAGCATAGGAGGACATGTTTTCAAAGGAGTTCTCTATGATCAAGGTCCTTCTCCTTCAAGTCTTTACACCAGTAGTACTATTGCACCTATGGAAGGTTCTTCAGGTGGAGGTCATCATCAACCTCAACAACTTGATTTCTTAACAACTGCAACCGCATCTGTGACCACAACAACTGGTATCTCGTTTGATCCTTCACTTTACTCGGCTCCGCTACATGCTTTCATGGCCGGTACACAATTTTTCCATCCCCAACATCCTAATTAA 846 0.435 MSRFFSLGQKQYTSSSNEEILEIWQQQSLKNYSVFGVAPKTCSFDECGGKFTMMMRRNGGTNCQDCGNQAKKDCTHLRCRTCCKSRGFQCQTHVKSTWVPASKRRERQQHLSMLQQHQPFRRRDHGESYKYKRHMDNQDGVGSSLPCPQPPNPTTGFELGQFPAEVSSASVTFRCVRVSSLDGPDEQCAYQTAVSIGGHVFKGVLYDQGPSPSSLYTSSTIAPMEGSSGGGHHQPQQLDFLTTATASVTTTTGISFDPSLYSAPLHAFMAGTQFFHPQHPN 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00489 281 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 13 265 IPR007818 GO:0003700|GO:0006355
Vivi3g00489 281 Pfam Domain of unknown function (DUF702) 60 210 - -
Vivi3g00489 281 NCBIfam putative zinc finger domain, LRP1 type 62 104 IPR006510 -
Vivi3g00489 281 NCBIfam LRP1 C-terminal domain 161 210 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00489 Vivi-Chr3 8299022 8300490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00489 61 275 C2H2 Transcription Factor Family AT3G51060 53.448 2.52e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vivi3g00489 DUF702 5.9e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00489 - - psat:127083804 442.58