Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00488 ATGGAAAATGAACATTATTCTTCTTCCACAATGGATATGCTACGTTCTGAGCCTATGCAACTTGCTCAATTGATCATTCCAATTGAATCAGCTCATCGAACCATCTCGTACCTTGGCGATCTTGGTCTTTTTCAATTCAAAGATCTTAATGAAGATAAAAGCCCATTCCAACGAACTTATGCTTCTCAGGTTAAAAGATGCGGAGAAATGACGCGTACAATGCGATTATTTAAGGAACAAATGACAAAGGCCGGTATATCTCCCTCAACTCTATCAACACCAGCTGATGCGGATCTAGAAAAATTAGAGGTTAAACTGGCGGAACTTGAAGCCGATCTACTTGAGATTAATGCAAATAATGAAAAGTTGCAACATGCTTATAATGAGCTTATAGAGTATAAGCTTGTTCTAGAGAAGGTTGGAGAGTTTTTTCCTTCCGCGCAAAATGGCGCTGTAGTTCGCCAAAGAGAACTTGGAGTTCAACCAATTGTCGAAGGGACTATTGACAGTCCATTATTAATTGAACAAGAGACAACAACATATCTGGTAAATCAGATTAAACTCGGGTTTATATGTGGTCTTGTTAATAGGGAAAAATCGATTCCGTTTGAACGGATTTTATTTCGTGCTACAAGAGGAAATGTGTTTCTGAGACAAGCTATGGTTGAAGATTATATTGTGGATCCTTTGTCAGGAGAGAAGGTTCATAAAAATGTGTTTGTTATATTCTATTCTGGAGAGAGAATAAAAAGTAAAATTACCAAAATTTGTGATGCTTTTGGAGCAAATCGTTATCCTTTTTCGGATGATTTGGGTAAACAATTTCAAACGATGACAGAGGTGTCAGGAAAACTTGCAGAATTAAAGACAACTATAGATATGGGTTTACTTCATCGAAGCAATTTGTTGCAGACAGTTGGATATGAATTTGAGCAATGGAACCTTTTGTTGAAGAAGGAAAAATCCATCTATCACATTCTAAATATGCTAAGCATTAATGTGACAAAGAAATGTCTCCTTGCAGAAGGATGGTGTCCTCTTTCTGCAACAAGTCAGATTCAGAAAGTATTGTTGCAGGCAACTACAGACTGTAGCTCTCAAGTTGGGGCAATATTTCAAGTTTTACAAACAAAGGAGTTACCTCCCACATATTTTTGCACAAATAAATTTACTGCTTCTTTTCAAGAAATTGTAGATGCATATGGAATTGCCAAATATCAAGAAGCAAATCCCGGTGTATACACGATCATTACATTTCCGTTCCTTTTTGCTGTAATGTTTGGCGATTGGGGTCATGGCATATGCTTACTACTAGCAACATTGTATTTCATAATAAATGAGAAAAAATTTTCTTCTCAGAAACTTGGAGACATATTAGAAATGGTTTTTGGTGGAAGATATATTATTTTGTTGATGTCTCTCTTCTCAATTTACACCGGATTTATATACAATGAGTTCTTCTCTATTCCTTTTGAACTATTCGGACCAACGGCCTATGGATGTCGCGATTCTTCATGCAGGGATGCTACTACAATAGGTTTGATAAAAATGCGTGACACATATCCATTTGGTGTGGATCCTAAATGGCATGGCACTCGTAGCGAACTTCCATTTCTTAACTCTCTGAAAATGAAGATGTCAATTCTACTTGGAGTATCTCAGATGAATCTCGGAATCATATTGAGTTACTATAATGCAAAATATTTTGAAAACAATATAAACATATGGCACCAATTTGTTCCGCAGATGATATTCTTGAATAGCCTATTTGGATACCTTTCACTCCTCATAATTGTAAAATGGTGCACTGGATCACAGGCTGACCTCTATCATGTCATGATATACATGTTCCTAAGTCCAACAGATGATTTGGGTGAAAACCAACTCTTTACTGGCCAAAAGTTTCTTCAAGTTATATTACTACTTTTGGCACTTGTTGCTGTACCATGGATGTTATTGCCAAAGCCTTTTCTCCTAAAGAAACAACATAGAGAAAGGCATAAAGGTCAATCTTACTCTTTGCTCTTTGCCGGGGATGATCCTCTTGAATCACAGTCAGATGGTGTTCATCGTGACAATGATGATTTTGATTTCAGTGAGATTTTTGTGCACCAACTTATACATACAATAGAATTTGTGCTTGGAGCTGTGTCCAATACTGCTTCATATCTTCGGTTATGGGCCCTCAGTCTAGCTCATTCCGAGTTGTCAAGCGTTTTCTATGACAAAGTTTTACTTCTGGCTCTCGGGTATAACAATACGATTGTGCTCATTGTTGGCATTATCGTTTTTATAAGTGCGACAGTTGGAGTCTTGTTGGTAATGGAAAGTTTAAGTGCTTTCTTGCATGCTTTAAGACTTCATTGGGTAGAGTTCCAGAACAAATTTTATGAAGGAGATGGTTACAAGTTCTTACCATTTGCATTTGCAACCCTTGGCGATGAGGATGGACTGTAG 2457 0.372 MENEHYSSSTMDMLRSEPMQLAQLIIPIESAHRTISYLGDLGLFQFKDLNEDKSPFQRTYASQVKRCGEMTRTMRLFKEQMTKAGISPSTLSTPADADLEKLEVKLAELEADLLEINANNEKLQHAYNELIEYKLVLEKVGEFFPSAQNGAVVRQRELGVQPIVEGTIDSPLLIEQETTTYLVNQIKLGFICGLVNREKSIPFERILFRATRGNVFLRQAMVEDYIVDPLSGEKVHKNVFVIFYSGERIKSKITKICDAFGANRYPFSDDLGKQFQTMTEVSGKLAELKTTIDMGLLHRSNLLQTVGYEFEQWNLLLKKEKSIYHILNMLSINVTKKCLLAEGWCPLSATSQIQKVLLQATTDCSSQVGAIFQVLQTKELPPTYFCTNKFTASFQEIVDAYGIAKYQEANPGVYTIITFPFLFAVMFGDWGHGICLLLATLYFIINEKKFSSQKLGDILEMVFGGRYIILLMSLFSIYTGFIYNEFFSIPFELFGPTAYGCRDSSCRDATTIGLIKMRDTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVSQMNLGIILSYYNAKYFENNINIWHQFVPQMIFLNSLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPTDDLGENQLFTGQKFLQVILLLLALVAVPWMLLPKPFLLKKQHRERHKGQSYSLLFAGDDPLESQSDGVHRDNDDFDFSEIFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLALGYNNTIVLIVGIIVFISATVGVLLVMESLSAFLHALRLHWVEFQNKFYEGDGYKFLPFAFATLGDEDGL 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00488 818 PIRSF ATP6V0A1 9 817 IPR026028 GO:0000220|GO:0046961
Vivi3g00488 818 Pfam V-type ATPase 116kDa subunit family 37 809 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vivi3g00488 818 Coils Coil 99 126 - -
Vivi3g00488 818 PANTHER VACUOLAR PROTON ATPASES 13 812 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00488 Vivi-Chr3 8246319 8250846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00488 11 816 Primary Pumps ATPases(2) AT2G21410 71.871 0.0 1218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00488 K02154 - gmx:100805813 1339.32