Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00467 ATGTCTAACTCAATGACCCATCAAAATCAGTTTGAGAACCAAGATTTACTAGGTAGTGGTTATGTTTCATCTTCTTCTTTAAGGAACAACAATGCTTATTCTCAAACATTCCATCACAATATTGAACAGCTATCACAAGGTTCTGAAATGAGTCATACAAGACATTTGATGGATCTACTTGGTGCAGCAAACGACAACAACAATCATCAAACTCAACAAGGTTTATCACTTTCTCTAGGCTCTCACATGCTTGTTGTTCCTACTTCTGATGAATACAGAAACCGTTCCTTGAATCAAGGTCTTATGACGATTAACCCAACATACTTCATGTCTGCTCAAGAACAGACACGTGATCAACCTGTGGTGGAGAATAATAATAATAATAATCTTACAAGTGATTATTTTTATGGAAGTTTTGGTTCAGGTGGTTCTTCTAATAACTCATTGTTGAACCGTTCTACTTCTACTTCCTATGGAAATGAGAGTTTTGGTTCTGTTATTGGAAACTCTAGATATCTTAAACCGGTTCAGTCGCTTCTTGAAGATCTTGTTGATGTTGGTGGAAATGTGATTGATAGAATGAATGAAAAGTATGCTGAGAAATTGTTTCATGCAAGTAGAACTGGTGCTAGAACTCTTTCCTCTGAGCTTAAAGCTGAGTTGAGGATTCATGGACATTTGTTGGCTGATAAACATGAACATCAAGTCAAAATTGCCAAGCTCATTTCTTTGTTGGATGAGGTTGAGAGTAGATATGAGAAATATTATCATCAAATGGAAGAAGTGGTGTCATCTTTTGAAATGATAGCAGGATTAGGAGCTGCCAAATGTTACACTGCTTTGGCACTTCAAGCAATGTCTAGACATTTTTGTAGCTTAAGAGATGCCATAATGTCACAAATAAATGTTGAGAAAAGAAAACTGTTTCAAGATGTACCAAAAATCAACAATGGATTATCTCAACTTAGCTTATTCGAGAGAGAAAACAATAGTAACAACAGACAGAATAGAATGTCTCTTCAACAACTTGGAATCATTCAGAATCAAAGACAAGTTTGGAGACCTATTAGAGGCTTACCCGAAACCTCTGTTGCAATTCTTCGTGCTTGGTTATTTGAGCACTTTCTTCATCCGTATCCTAATGATTCTGAGAAATTAATGCTGGCTTCGCAAACCGGTTTAACTAAAAACCAAGTGTCAAATTGGTTCATAAATGCGAGGGTAAGGTTATGGAAACCAATGATAGAAGAAATGTACAAAGAAGAGTTTGGAGACTCATCTGAAGACTCAAATCCTGCAGCTAACAATTACATGTCAAGAGAAGATGCAACAGACTGTGTGGAGGATTAG 1350 0.3652 MSNSMTHQNQFENQDLLGSGYVSSSSLRNNNAYSQTFHHNIEQLSQGSEMSHTRHLMDLLGAANDNNNHQTQQGLSLSLGSHMLVVPTSDEYRNRSLNQGLMTINPTYFMSAQEQTRDQPVVENNNNNNLTSDYFYGSFGSGGSSNNSLLNRSTSTSYGNESFGSVIGNSRYLKPVQSLLEDLVDVGGNVIDRMNEKYAEKLFHASRTGARTLSSELKAELRIHGHLLADKHEHQVKIAKLISLLDEVESRYEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAIMSQINVEKRKLFQDVPKINNGLSQLSLFERENNSNNRQNRMSLQQLGIIQNQRQVWRPIRGLPETSVAILRAWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGDSSEDSNPAANNYMSREDATDCVED 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00467 449 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 76 431 - -
Vivi3g00467 449 SMART HOX_1 353 417 IPR001356 GO:0003677
Vivi3g00467 449 SUPERFAMILY Homeodomain-like 359 421 IPR009057 -
Vivi3g00467 449 ProSiteProfiles 'Homeobox' domain profile. 372 413 IPR001356 GO:0003677
Vivi3g00467 449 Gene3D - 347 428 - -
Vivi3g00467 449 Pfam Associated with HOX 166 298 IPR006563 -
Vivi3g00467 449 MobiDBLite consensus disorder prediction 422 449 - -
Vivi3g00467 449 Pfam Homeobox KN domain 370 409 IPR008422 GO:0003677|GO:0006355
Vivi3g00467 449 CDD homeodomain 353 414 IPR001356 GO:0003677
Vivi3g00467 449 SMART prehox3 161 299 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00467 Vivi-Chr3 8004468 8006807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00467 73 428 Homeobox Transcription Factor Family AT1G19700 42.627 1.61e-81 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vivi3g00467 POX 6.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00467 - - tpra:123893532 709.138