Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00461 ATGGCTTGTTCCGGTGGAAATGGAAATTCTTCTGCATCTACGAAATTCGGAAGTTCTGGATCTGAGAAGGATTTGAACAATCTGATGGATGAGAGAAAAAACAAGAGGAAACAATCGAATCGGGAGTCGGCGAAGAGATCTAGGATGAGGAAGCAGAAACATGTTGATGATATGATGAATCAGGTATCTGAGCTCACAAAAGACAATAGTGAGATTGTGAACAAGATAAATATCACAACACAGCACTATTTGAATGTTGAGGCTGAAAATTCAATTTTGAGGGCCCAAATAGGTGAGCTTAGTCAAAGGTTTCAATCATTGAATAACATCATTGAACTCATCAACACAAACAACACTAGTAATGGGTCCTATGATTCAAGGGATTGTTATGAAACAAGTGGTGCACAAAACATCATGAATTTTATGATGTATAATAATAACCTGCCCATTACTACAACTTCTGCAGATGTTTTTAAGTGGTGA 483 0.3727 MACSGGNGNSSASTKFGSSGSEKDLNNLMDERKNKRKQSNRESAKRSRMRKQKHVDDMMNQVSELTKDNSEIVNKINITTQHYLNVEAENSILRAQIGELSQRFQSLNNIIELINTNNTSNGSYDSRDCYETSGAQNIMNFMMYNNNLPITTTSADVFKW 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00461 160 SUPERFAMILY Leucine zipper domain 32 84 IPR046347 GO:0003700|GO:0006355
Vivi3g00461 160 SMART brlzneu 28 92 IPR004827 GO:0003700|GO:0006355
Vivi3g00461 160 Gene3D - 30 84 - -
Vivi3g00461 160 Coils Coil 22 45 - -
Vivi3g00461 160 CDD bZIP_plant_GBF1 33 83 IPR045314 GO:0003700|GO:0006355
Vivi3g00461 160 FunFam BZIP transcription factor 30 82 - -
Vivi3g00461 160 MobiDBLite consensus disorder prediction 1 56 - -
Vivi3g00461 160 MobiDBLite consensus disorder prediction 1 24 - -
Vivi3g00461 160 PANTHER BZIP TRANSCRIPTION FACTOR 44 12 133 - -
Vivi3g00461 160 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 35 50 IPR004827 GO:0003700|GO:0006355
Vivi3g00461 160 Coils Coil 55 75 - -
Vivi3g00461 160 Pfam bZIP transcription factor 32 83 IPR004827 GO:0003700|GO:0006355
Vivi3g00461 160 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 30 93 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00461 Vivi-Chr3 7949296 7950408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00461 4 96 bZIP Transcription Factor Family AT1G75390 61.053 1.63e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi3g00461 bZIP_1 8e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00461 K25786 - tcc:18591443 169.859