Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00460 ATGGCTGCAACTGTGGTGGGAGGCGCATTTCTCTCGGCTACAATTCAAATCATAGCAGACAGACTTACCTCCTCGGAGTTTCGTGTTTTCATCAGAAACACCAAGTTCAATTACTCACTACTGGAAGAGTTGAAAACAACACTATCAGCTCTTCAAGCTGTGCTGGCTGATGCAGAACAGAAGCAGTTTAAGGATCTTCATGTTAAACAATGGCTTGAAGACTTGAAAGATGCATTATTTGACGCTGAAGATTTGCTCAACTTAATCAGCTACGATGCCCTGCGATGCAAGGTGGAGAACACACCGGTTAATCAGCTGAAGTACTTGCCTTCAAAATCTATAAATATCAATTCAAAGATGGAGAAGATGTGTAAAAGGCTGCAAACTTTTGTCCAGCTTAAAAATATCCTTGGCTTGCAGAGAACTGTAAGTGGTAGAGATTCTCATAGAACCCCTTCGTGTTCAGTGGTAAATGAATCTGTTGTTGTAGGTAGGAAGGATGATAAGAATACACTCATCAATATGCTGGTATCAGACTGTGGCACAAGCAGAAATAATAACTTAGGTGTTGTTGCCATTTTGGGTATGGGAGGTGTCGGTAAAACTACTCTTGCGCAACTTGTTTACAATGATGAAAAAGTTCAACAACATTTTGATTTCAAAGCTTGGGTTTGTGTATCCGAGGACTTCGATGTTGTGAGAGTAACCAAGTCTCTCCTTGAATCTGTCGTTAGAAATACAACATCTGCTGCTTCAAAGGTCTGGGAAAGTGATAATCTTGATATTCTTCGAGTTGAATTGAAGAAAAACTTGAGGGAGAAAAGATTTTTGTTTGTGTTGGATGATCTATGGAATGACAATTACAATGATTGGGATGAGCTGGTAAGTCCGCTCATTGATGGAAAACCTGGAAGTTCGGTAATTATAACAACACGTCAACAAAAAGTTGCAGTGATGGCACACACATTTCCAATTCATAAATTAGACCCTCTGTCACAAGAAGAATGTTGGTCTTTACTATCAAAGCATGCATTGGGAAGTGATGAGTTTCACGATAGTAAGAACACAGCCCTTGAAGAAATTGGCAGGAAGATTGCAAGAAAGTGTGGTGGATTGCCAATAGCGGCTAAAACACTAGGAGGTCTTCTACGTTCAAGGGTAGATAAAAGGGAGTGGACTGCAATTTTAAACAGCAATGTATGGAATTTACCAAATGATAATATTATGCCTGCTTTGCATTTGAGTTATCATTATCTTCCCTCTCATTTGAAAAGATGTTTTGCATATTGTTCAATTTTTCCGAAGGACTATCCACTTGATAGGAAGAAAATGGTTTTGTTGTGGATGGCAGAAGGCTTCCTTGATTGTTCTCAAGGGGGAAAATCAGCGGAGGAATTAGGTGATGATTGTTTTGCTGAATTGTTATCCAGATCGTTAATTCAACAATCAAATGATGATGCTGGTGGAAAAATGTTTTTCATGCATGAACTTATCAACGATTTAGCTACAGTTGTATCTGGAAAAAGTTGTTCTAGGTTTGAAAGTGGTGACATCTCTGAAAAGGTTCGTTATTTGTCATATAATCAAGAAGGGTATGACACTCTCACAAAGTTCCCTACCCATTTCAAATGCTTGAGAAGCTTCTTACCCATTTACTATTGGAGGTTACACATTTACTTATCCATGAAGGTGGTTGATGATTTGCTACCATCACTCGAATGGTTGCGTGTGTTATCTCTATCAGAGTATACAAACATCACCAAACTACCGGATTCTGTTGGCAATTTGAAGCAGTTGCGGTATCTAGACCTCTCCTCCACTAAAATACAAAGCTTGCCAGATACAGTATGTAAACTTTACAATTTGCAAAGCTTGATTTTATTAGGTTGCGTGTGTCTCACTGAATTGCCAGTTCATATGGGAAATTTAATCAGTTTACGTCATCTTGATATAAGTGGAACAGATATAAAGGAATTGCCAAAAGAAATTTGTGGACTAGAAAACCTTCAAACTTTAACCGTTTTTGTAGTGGGGAAGCAACAAGTAGGGTTATCTATCAAAGACCTTAAGAAATTTCCACATCTACGAGGAAAACTTACGATTAAGAACCTGCATAATATCATTGATGCCAAGGAGGCACATGATGCCAACTTGAAAAACAAAGAGCAAATTGAAGAGTTAGAACTGCTTTGGGGAAAACATAGTGAAGACTCGCAAAAAGTGAAAATTATGCTTGATATGTTGCAACCTTCAATGAACCTGAAGAGCCTTAAAATTGATTTATATGGCGGGACAAGCTTTCCAAGTTGGTTGGGAGATTCTTCGTTTTCTAACATGGTGTCCCTTTGCATAAGTAATTGTGAATATTGTGTGACACTTCCACCGTTGGGGCAGCTAGCTTCACTCAAGGACCTAGAAATATATGGTATGAAGATGCTGGAGACAATTGGCCCAGAGTTCTACTATGTCCAAGCAGGAGAAAGTTCCATTTCTTCCTTCCAACCATTTCCATCCCTTGAGCTTATGAAATTTCACGATATGCCAAATTGGAAGGAATGGCTTTCTTTTGAAGGAAGCAATTCTGCTTTTCCTCGTCTTAAAACTCTCGAGTTACACAAGTGTCCCGAACTTAGGCGACATTTTCCTATTCACCTCTATTCCATAGAAGAAATTGAAATAGAAGATTGTGGTCATCTATTGGAAACACCGCCTACTATGCATTGGCTAATGTCAATTAAAGAAATAAAAATTAGGGGAGATTTAGATTTTGAGGGGTCTAGTGAAAGAATCCAATGGCCGTTGCTTGAAAGTGGTTCTCCGTGCTTGCTGCAGAGTGTTGCGATTGATAGTTGTTTGGCGCTTTTGTCTCTGCCAAAGATGATTATGAGAAGCAGCTGTCTTCAATACTTGCATCTCTATCAAATTCCGTCTCTCATTTCATTTCCGATGGATGGTCTACCAACATCACTGCAGTCAATTAGTATTCATTATTGTGCCAAGTTAGCATTCATGCCTCCTGAAACATGGAGCAATTACACGTCCCTTGTGAGTTTGACAATATTGAGTAGCTGTGATGCACTTACATCCTTCCAACTTGATGGTTTCCCTGCGCTCCAAATGCTTCACATTGGTTATTGTACGAGTCTAGATTCAATTTTTGTTTCAGAAAGTCCTTCATGTCATCCAACAAGACTCCAATCACTCGAAATCAGATCGCACGATTCAATTGGATTGTTTAAAGTCAAGCTTAAGATGGACATGCTCACTGCTCTTGAACATTTGGTTTTGGAATGCGGAGAGTTGTCATTTTTTGAAGGAGTTTCTCTACCTCCCAATTTGCAATCAATTGATATTCAGTTCCTAAAAACAACTCCGCCTGTAAGGGAATGGAGTCTTCAAGGTCTCACTGCTCTTTCAAGTTTTAGTATTGGAGGTTGTGTTGATATTGTTAACACCTTGTTAAAGGAGCCGCTGTTACCCATCTCCGTTGTGTCTCTGACTATCGGTTATGTCTATAAAATGAAGTCCTTTAAAGGAAATGGGCTTCAGCACCTCTCCTCTCTCGAAAATCTCCACTTTCGTAACTGTCAACAGCTTGAGTCGTTTCCAGAAAACTATCTCCCTTCCTCGCTGAAATCGCTTCAGTTTTGGTTTTGTCCTAGACTTGAGTCATTACCAGAAGAAAGCCTCCCCGACTCTCTCAAGCTACTGGTCATTTCAAGATGCCCTGCATTAGAAGAAAGGTATAAAAGGAAGGAACATTGGTCCAAAATTGCTCACATCCCTGTCATAGAAATAGATGGACATGTCACAATATGA 3819 0.3943 MAATVVGGAFLSATIQIIADRLTSSEFRVFIRNTKFNYSLLEELKTTLSALQAVLADAEQKQFKDLHVKQWLEDLKDALFDAEDLLNLISYDALRCKVENTPVNQLKYLPSKSININSKMEKMCKRLQTFVQLKNILGLQRTVSGRDSHRTPSCSVVNESVVVGRKDDKNTLINMLVSDCGTSRNNNLGVVAILGMGGVGKTTLAQLVYNDEKVQQHFDFKAWVCVSEDFDVVRVTKSLLESVVRNTTSAASKVWESDNLDILRVELKKNLREKRFLFVLDDLWNDNYNDWDELVSPLIDGKPGSSVIITTRQQKVAVMAHTFPIHKLDPLSQEECWSLLSKHALGSDEFHDSKNTALEEIGRKIARKCGGLPIAAKTLGGLLRSRVDKREWTAILNSNVWNLPNDNIMPALHLSYHYLPSHLKRCFAYCSIFPKDYPLDRKKMVLLWMAEGFLDCSQGGKSAEELGDDCFAELLSRSLIQQSNDDAGGKMFFMHELINDLATVVSGKSCSRFESGDISEKVRYLSYNQEGYDTLTKFPTHFKCLRSFLPIYYWRLHIYLSMKVVDDLLPSLEWLRVLSLSEYTNITKLPDSVGNLKQLRYLDLSSTKIQSLPDTVCKLYNLQSLILLGCVCLTELPVHMGNLISLRHLDISGTDIKELPKEICGLENLQTLTVFVVGKQQVGLSIKDLKKFPHLRGKLTIKNLHNIIDAKEAHDANLKNKEQIEELELLWGKHSEDSQKVKIMLDMLQPSMNLKSLKIDLYGGTSFPSWLGDSSFSNMVSLCISNCEYCVTLPPLGQLASLKDLEIYGMKMLETIGPEFYYVQAGESSISSFQPFPSLELMKFHDMPNWKEWLSFEGSNSAFPRLKTLELHKCPELRRHFPIHLYSIEEIEIEDCGHLLETPPTMHWLMSIKEIKIRGDLDFEGSSERIQWPLLESGSPCLLQSVAIDSCLALLSLPKMIMRSSCLQYLHLYQIPSLISFPMDGLPTSLQSISIHYCAKLAFMPPETWSNYTSLVSLTILSSCDALTSFQLDGFPALQMLHIGYCTSLDSIFVSESPSCHPTRLQSLEIRSHDSIGLFKVKLKMDMLTALEHLVLECGELSFFEGVSLPPNLQSIDIQFLKTTPPVREWSLQGLTALSSFSIGGCVDIVNTLLKEPLLPISVVSLTIGYVYKMKSFKGNGLQHLSSLENLHFRNCQQLESFPENYLPSSLKSLQFWFCPRLESLPEESLPDSLKLLVISRCPALEERYKRKEHWSKIAHIPVIEIDGHVTI 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00460 1272 PANTHER DISEASE RESISTANCE PROTEIN RP 41 896 IPR044974 GO:0006952
Vivi3g00460 1272 PRINTS Disease resistance protein signature 270 284 - -
Vivi3g00460 1272 PRINTS Disease resistance protein signature 369 383 - -
Vivi3g00460 1272 PRINTS Disease resistance protein signature 190 205 - -
Vivi3g00460 1272 PRINTS Disease resistance protein signature 594 610 - -
Vivi3g00460 1272 Coils Coil 41 61 - -
Vivi3g00460 1272 Gene3D - 38 136 - -
Vivi3g00460 1272 SUPERFAMILY L domain-like 494 918 - -
Vivi3g00460 1272 SUPERFAMILY L domain-like 935 1243 - -
Vivi3g00460 1272 Gene3D - 330 414 IPR042197 -
Vivi3g00460 1272 Pfam NB-ARC domain 184 397 IPR002182 GO:0043531
Vivi3g00460 1272 FunFam Probable disease resistance protein At1g61300 146 322 - -
Vivi3g00460 1272 SMART LRR_typ_2 643 666 IPR003591 -
Vivi3g00460 1272 SMART LRR_typ_2 596 619 IPR003591 -
Vivi3g00460 1272 Gene3D Ribonuclease Inhibitor 1084 1250 IPR032675 -
Vivi3g00460 1272 Gene3D - 147 323 IPR027417 -
Vivi3g00460 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 430 IPR027417 -
Vivi3g00460 1272 Pfam Rx N-terminal domain 10 101 IPR041118 -
Vivi3g00460 1272 Gene3D - 415 504 IPR036388 -
Vivi3g00460 1272 Gene3D Ribonuclease Inhibitor 982 1083 IPR032675 -
Vivi3g00460 1272 FunFam Probable disease resistance protein At1g63360 416 504 - -
Vivi3g00460 1272 Gene3D Ribonuclease Inhibitor 555 934 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00460 Vivi-Chr3 7942323 7946448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00460 187 686 WRKY Transcription Factor Family AT5G45050 22.936 6.19e-10 62.0