Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00454 ATGATTATGGAATCTAGAAATCTCCATCATCTCCAAGACCAACAACCTCCTCCTCTTTCTTCTTTATCTTCTTCTATTCCATCATCTTATGCTGTTGGAGGAGGAACCACCACCATCCACTCATGGACCCCAACACACATCACTTTGAATAATGCGGAAGGTAACTTCAACTCAACCCTCCATGAAGTTAATCCGAGATACTCGAGATCAAGCGCGATGATTCAAGATTTAGGTTATCATCATCAATGGACTAGTGATGATGTTAACAGAAACCATGAGTCAGATTCTATTAAGGAAGAGATTTCTTTTACTAATTTCCCTAAATTTACTGAAATGCTTAATTACACTCCTCCTAATTCAAGCATGGAGAACTATGGAGTACTCGATGATTCGTCCGCTACGATACATATGAAGAATAGTACTAATGATGAACACAAGGATATGAATGCTCTCATGCTCAAGAATCTTTACACTGGTGGAGAGTTCTATAATGCTCAAAATTATCCTAACATTGGTAGCCAGATTCACCCTAGTATAAATATCTCGAACATGAATCCGTACTCGTCTTCGTCTTCAACCACAACTTTGGATATGAACATGCAGTCATTAGATCTATTAACTAGTTCACAAGATCATCATCTTGGTAGATTTACAACTAATGATCATGAAAACCTTTCTTTTCATCTTCATCCGATGCAAAACCAACTCGCGAACCGATCCTCTTCTAGTAACTCCATTAATCCGTCGCTACTCAACAATGGTGGTGGAGAAACTAAGAGAGTGATGCAATCGAAGACTTCTCAATCTGAAACCGCGTTGAAGAAATCACGATCTTCATCGGAATCTAAACCTTCGTGTGCACCCTTTAAGGTTAGGAAAGAGAAATTAGGCGATAGGATTGCGGCTCTTCAACAGTTAGTGGCTCCTTTTGGAAAGACTGACACTGCATCTGTACTCATGGAAGCTATTGGATACATTAAATTCCTTCAAGGCCAAGTCGAGACACTGAGTGTTCCTTATATGAAGTCAAGTCAAAACCAAAACAATAGATTGATGCAAGGGGATTCAGCCATAGGCGACATAAATGGAGAACCTAAGCAATATCTGAGAAGTCGAGGCCTGTGTCTCGTGCCATTGTCATGCATGTCATACATAGCCGGCGATGGCAGCACAGAGGTGTGGCAACAACGCCCGAACTTTGGTGGACCGGCTTGA 1215 0.4099 MIMESRNLHHLQDQQPPPLSSLSSSIPSSYAVGGGTTTIHSWTPTHITLNNAEGNFNSTLHEVNPRYSRSSAMIQDLGYHHQWTSDDVNRNHESDSIKEEISFTNFPKFTEMLNYTPPNSSMENYGVLDDSSATIHMKNSTNDEHKDMNALMLKNLYTGGEFYNAQNYPNIGSQIHPSINISNMNPYSSSSSTTTLDMNMQSLDLLTSSQDHHLGRFTTNDHENLSFHLHPMQNQLANRSSSSNSINPSLLNNGGGETKRVMQSKTSQSETALKKSRSSSESKPSCAPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQGQVETLSVPYMKSSQNQNNRLMQGDSAIGDINGEPKQYLRSRGLCLVPLSCMSYIAGDGSTEVWQQRPNFGGPA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00454 404 Gene3D - 290 357 IPR036638 GO:0046983
Vivi3g00454 404 MobiDBLite consensus disorder prediction 235 285 - -
Vivi3g00454 404 MobiDBLite consensus disorder prediction 235 290 - -
Vivi3g00454 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
Vivi3g00454 404 FunFam Transcription factor bHLH123 family 290 352 - -
Vivi3g00454 404 MobiDBLite consensus disorder prediction 1 27 - -
Vivi3g00454 404 CDD bHLH_AtbHLH_like 288 337 IPR045239 -
Vivi3g00454 404 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 148 383 - -
Vivi3g00454 404 MobiDBLite consensus disorder prediction 8 27 - -
Vivi3g00454 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 290 343 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00454 Vivi-Chr3 7837509 7840522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00454 25 402 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 36.526 1.28e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00454 - - mtr:25490216 488.419