Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00453 ATGATTATGGAATCTAGAAATCTCCATCATCTCCAAGACCAACAACCTCCTCCTCTTTCTTCTTTATCTTCTTCTATTCCATCATCTTATGCTGTTGGAGGAGGAACCACCACCATCCACTCATGGACCCCAACACACATCACTTTGAATAATGCGGAAGGTAACTTCAACTCAACCCTCCATGAAGTTAATCCGAGATACTCGAGATCAAGCGCGATGATTCAAGATTTAGGTTATCATCATCAATGGACTAGTGATGATGTTAACAGAAACCATGAGTCAGATTCTATTAAGGAAGAGATTTCTTTTACTAATTTCCCTAAATTTACTGAAATGCTTAATTACACTCCTCCTAATTCAAGCATGGAGAACTATGGAGTACTCGATGATTCGTCCGCTACGATACATATGAAGAATAGTACTAATGATGAACACAAGGATATGAATGCTCTCATGCTCAAGAATCTTTACACTGGTGGAGAGTTCTATAATGCTCAAAATTATCCTAACATTGGTAGCCAGATTCACCCTAGTATAAATATCTCGAACATGAATCCGTACTCGTCTTCGTCTTCAACCACAACTTTGGATATGAACATGCAGTCATTAGATCTATTAACTAGTTCACAAGATCATCATCTTGGTAGATTTACAACTAATGATCATGAAAACCTTTCTTTTCATCTTCATCCGATGCAAAACCAACTCGCGAACCGATCCTCTTCTAGTAACTCCATTAATAAGCCGTCGCTACTCAACAATGGTGGTGGAGAAACTAAGAGAGTGATGCAATCGAAGACTTCTCAATCTGAAACCGCGTTGAAGAAATCACGATCTTCATCGGAATCTAAACCTTCGTGTGCACCCTTTAAGGTTAGGAAAGAGAAATTAGGCGATAGGATTGCGGCTCTTCAACAGTTAGTGGCTCCTTTTGGAAAGACTGACACTGCATCTGTACTCATGGAAGCTATTGGATACATTAAATTCCTTCAAGGCCAAGTCGAGACACTGAGTGTTCCTTATATGAAGTCAAGTCAAAACCAAAACAATAGATTGATGCAAGGGGATTCAGCCATAGGCGACATAAATGGAGAACCTAAGCAATATCTGAGAAGTCGAGGCCTGTGTCTCGTGCCATTGTCATGCATGTCATACATAGCCGGCGATGGCAGCACAGAGGTGTGGCAACAACGCCCGAACTTTGGTGGACCGGCTTGA 1218 0.4097 MIMESRNLHHLQDQQPPPLSSLSSSIPSSYAVGGGTTTIHSWTPTHITLNNAEGNFNSTLHEVNPRYSRSSAMIQDLGYHHQWTSDDVNRNHESDSIKEEISFTNFPKFTEMLNYTPPNSSMENYGVLDDSSATIHMKNSTNDEHKDMNALMLKNLYTGGEFYNAQNYPNIGSQIHPSINISNMNPYSSSSSTTTLDMNMQSLDLLTSSQDHHLGRFTTNDHENLSFHLHPMQNQLANRSSSSNSINKPSLLNNGGGETKRVMQSKTSQSETALKKSRSSSESKPSCAPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQGQVETLSVPYMKSSQNQNNRLMQGDSAIGDINGEPKQYLRSRGLCLVPLSCMSYIAGDGSTEVWQQRPNFGGPA 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00453 405 CDD bHLH_AtbHLH_like 289 338 IPR045239 -
Vivi3g00453 405 MobiDBLite consensus disorder prediction 235 291 - -
Vivi3g00453 405 FunFam Transcription factor bHLH123 family 291 353 - -
Vivi3g00453 405 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 152 384 - -
Vivi3g00453 405 MobiDBLite consensus disorder prediction 1 27 - -
Vivi3g00453 405 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 281 330 IPR011598 GO:0046983
Vivi3g00453 405 Gene3D - 291 358 IPR036638 GO:0046983
Vivi3g00453 405 MobiDBLite consensus disorder prediction 8 27 - -
Vivi3g00453 405 MobiDBLite consensus disorder prediction 235 286 - -
Vivi3g00453 405 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 344 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00453 Vivi-Chr3 7837509 7840522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00453 25 403 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 36.364 1.21e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00453 - - mtr:25490216 499.204