Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00423 ATGAAGCATAAGTTGTTGTTTCTAACTCTAGTTTTCTTAGTTCTTTATGTAGAAGCAGATGATGTTGGGTTTGTGAAAACAAGAGGAGTACAGCTTATGCTGAATGACACCCCTTATTATGCCAATGGTTTTAACGCATATTGGTTAATGTACATTGCTTCTGATCCATCTCAAAGAAACAAAGTATCAACAACTTTTCAAGAAGCTACAAATCATGAACTTAACATAATTAGAACTTGGGCTTTCAGTGATGGTGGTTATAAACCACTGCAATACTCACCTGGATCCTACAATGAGGAAATGTTCCAGGGGTTGGACTTTGTGATGAGTGAAGCTAGAAAATATGGAATGAAGGTGATTTTGAGTTTGGTGAACAATTATGAGAGTTTTGGTGGGAAGAAACAATATGTTGAATGGGCAAGGAGTGAGGGACAGTCCATAAATTCTGAAGATGATTTCTTCACTAATAGTGTTGTGAAGGGTTACTATAAAAACCACATTAAGACAGTGCTTACAAGACATAATAACTTGAGTGGAGTTGCTTACAAAGATGACCCTACTATAATGGCTTGGGAGCTTATGAATGAGATTAGATGCTCTTCAGACCATTCAGGAAATTCAGTTCAGGGTTGGATTAGTGAGATGGCATCTTACTTGAAATCCATTGATGGAAACCATTTGCTTGAAGCTGGTTTAGAAGGTTTCTACGGACAATCAAAAACAAACTCTAATCCTAACTTCCAAGTAGGAACCGATTTCATTGCAAACAACCAAATCTCCAACATCGATTTTGCAACACTACATTCCTACCCAGATCAATGGTTATCAAGTTCAAGCTATGAAGACCGACTCTCTTTCTTAAGTGAGTGGCTCAATGAGCACATCCAAGATGCACAAAACATCCTTCACAAGCCACTTCTATTTGCAGAATTTGGAATTTCCACTAAAAACTTGGGCAATAATAGCTCAACACTGAGGGATAAGTTTTTCAATACAGTATATTCATCTATATATTCATCAGCAAGTGGCGGTGGAACTGCTGTTGGTGGCTTGTTTTGGCAACTTCTTGCTCAAGGGATGGATTCTTTCCGAGATGATTACGAAGTGATTTTAGCTGAGAGTCCCTCAACATCAGCCTTGATTTCTCAAGAGTCTCGAAAACTAAAACGAATTCGCAAGATGTATGCCAAACTTCACAAACATTGA 1206 0.3806 MKHKLLFLTLVFLVLYVEADDVGFVKTRGVQLMLNDTPYYANGFNAYWLMYIASDPSQRNKVSTTFQEATNHELNIIRTWAFSDGGYKPLQYSPGSYNEEMFQGLDFVMSEARKYGMKVILSLVNNYESFGGKKQYVEWARSEGQSINSEDDFFTNSVVKGYYKNHIKTVLTRHNNLSGVAYKDDPTIMAWELMNEIRCSSDHSGNSVQGWISEMASYLKSIDGNHLLEAGLEGFYGQSKTNSNPNFQVGTDFIANNQISNIDFATLHSYPDQWLSSSSYEDRLSFLSEWLNEHIQDAQNILHKPLLFAEFGISTKNLGNNSSTLRDKFFNTVYSSIYSSASGGGTAVGGLFWQLLAQGMDSFRDDYEVILAESPSTSALISQESRKLKRIRKMYAKLHKH 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00423 401 FunFam Mannan endo-1,4-beta-mannosidase 6 21 392 - -
Vivi3g00423 401 Gene3D Glycosidases 21 392 - -
Vivi3g00423 401 Pfam Cellulase (glycosyl hydrolase family 5) 57 318 IPR001547 GO:0004553|GO:0071704
Vivi3g00423 401 SUPERFAMILY (Trans)glycosidases 24 375 IPR017853 -
Vivi3g00423 401 PANTHER - 7 393 IPR045053 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00423 Vivi-Chr3 7349746 7351854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00423 23 398 Glycoside Hydrolase AT5G66460 65.172 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00423 K19355 - gmx:100794126 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00423 3 7349746 7351854 Vivi3g00423 3 7349746 7351854 ECH
Vivi3g00423 3 7349746 7351854 Vivi3g00423 3 7349746 7351854 PCT