Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00406 ATGGGTTGGACAGGAGAAGAGAATAGACGTTTTGAGGATGCACTTGCTGTATTTGGTCCAGAAGATCCAAACCGGTGGCAACGTGTGGCTAACGCTGTTGGTGGAAAGTCAATACAAGAAGTTCAAATGCATTACGAAATCCTCAAAGAAGATCTCATTCGAATTGAACGTGATCAAGTTCCACTACCCTCTTACAGAGGAGGAGGTTCTTCTGGTGTCAATATCAACAATACCAGAAGACAACTAATTGCTGATGAACAAAGGAGAATGAGGAATCTTAATATCCGTTGA 291 0.4192 MGWTGEENRRFEDALAVFGPEDPNRWQRVANAVGGKSIQEVQMHYEILKEDLIRIERDQVPLPSYRGGGSSGVNINNTRRQLIADEQRRMRNLNIR 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00406 96 Gene3D - 2 50 - -
Vivi3g00406 96 Pfam Myb-like DNA-binding domain 3 45 IPR001005 -
Vivi3g00406 96 ProSiteProfiles Myb-like domain profile. 1 49 IPR001005 -
Vivi3g00406 96 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 74 IPR044636 GO:0003700
Vivi3g00406 96 SMART sant 3 51 IPR001005 -
Vivi3g00406 96 SUPERFAMILY Homeodomain-like 3 56 IPR009057 -
Vivi3g00406 96 CDD SANT 3 49 IPR001005 -
Vivi3g00406 96 FunFam Transcription factor SRM1 1 62 - -
Vivi3g00406 96 Coils Coil 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00406 Vivi-Chr3 7011687 7012822 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi3g00406 Myb_DNA-binding 6.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00406 - - psat:127084298 189.889