Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00402 ATGGCTTCGAGCTCGAATTGGACAGCAAAACAAAACAAAAGATTTGAGAACGCATTGGCAATGTTGGAGAAGGATACTCCAGATCGTTGGCAGAAGGTGGCTAGAGCTGTGGGAGGAAAGACAGTTGAAGAAGTGAAGAGACATTATGAGAAGCTTGTTGAAGATGTGAAGCTGATTGAGGAAGGTCATGTTCCACTGCCTAAGTACACAAATAATGGTTGCAATTACATGATGGATCAAGAAAAAAGGATGAAGGCTCTAAGTCTCCAGTAA 273 0.4212 MASSSNWTAKQNKRFENALAMLEKDTPDRWQKVARAVGGKTVEEVKRHYEKLVEDVKLIEEGHVPLPKYTNNGCNYMMDQEKRMKALSLQ 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00402 90 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 75 IPR044636 GO:0003700
Vivi3g00402 90 Gene3D - 1 66 - -
Vivi3g00402 90 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
Vivi3g00402 90 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Vivi3g00402 90 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Vivi3g00402 90 SUPERFAMILY Homeodomain-like 5 60 IPR009057 -
Vivi3g00402 90 SMART sant 3 55 IPR001005 -
Vivi3g00402 90 CDD SANT 6 53 IPR001005 -
Vivi3g00402 90 FunFam Transcription factor SRM1 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00402 Vivi-Chr3 6992098 6992721 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi3g00402 Myb_DNA-binding 2.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00402 - - gmx:100794970 141.354