Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00380 ATGGCACTAGCAGCACTCCCTCTATTCTCAAATCCTCCATGCCGTTGCTCTTCTTCACATTCCCGTCAACCCTCAACCTTTTCCTCTCATCTTCAAACTCAGCCCTTTATCTCCCCACTCACCAAATCACAACCGCCAAACAACAACTATCTCCTTTTCCAATTTCGGCCCTCCATCAACTGCCGCAGCAGTTCTCACACACCCAATCTCGACTTCCAATACGTCAGACTTGTCACTTTGTTTCAAGAAATCGGTATCAGCTTTGAGGAAACCAATTTGCTCTTGAGCAATGCTTCCGAACTGACCTCGATACAACTAGATTTATTGCGGTATCACATTCTTTCTTTAAAGTCTCTTGGGTTAGGTCGTATGTCCATCAATCACATAGTTACAAAGCAATTAAATATGCTAACTTCAAATGAAATTGACCCATTGTTAAACTTTTTGAGAAATGAATTGCAAGGACAGGTTGAGGAAGCTAAGGTGAAACATCTTTTATCGGCTAATCAGCCAAAAGAATTATCTAATTTTCCTCAGAAGGTTCAATTGCTTATTGACAGTGGAATTGGGGTTGATAAGATTGCACATGTGCTTAACAAAGTGAGTTTGTCAAAGGCAATTTGCCATAAGTCAATGGAAGAAATTGAAAGAGTAATTAGTTTCTTAAAACCATTTGGTGGTGTTGATTTGATTCTGAAGCACCCTGTGCTTCTCAACCATGATTTGGATAATAAGCTGAAACCGAGATTCAGGGTTCTTACTGAGTTAAGTGGCGGAGATGAGGATAGTGTTGGGAAAGTGGTGAATATGTTCCCTTCGATCATGCATTTAAGGACAGAACGTCTTGAAGAACAAATAGAGTTCTTGAGGTCTTTTGCCGAACTTGATGATCAACAAATATTTAGGATAGTGTTGGTGTATCCATCTATTTTCAATAGTAATAGAGAGAGGAAACTGCGTCCTAGATTACAATTTCTCAAGGATTGTGGGTTAGACTCGGGCGATATCTTTAAATTCTTGATCAAAGAACCGACATTTTTGGGCATTTCGTTCCGCAATAACCTTGAGTGTAAGCTTTTGTTTTTGGTCAAGATTGGGTATGAATATAGGACAAAAGAGTTGGCAATGGCGATTGCGGCTTCTACTAGAACAAGCTGTGGGAATATGCAGAAGGCGGTGAGTTTATTCTTGAATTATGGGTTGTCGCCCGAAGACATTTTTGCTATGAGTAAGAAGCGTCCAGCGACGCTGCAGTATAATCCCGCCTCTCTAGAGAAAAAGATTAAGTATTTGACAGAGGAGATGGATCGTGACATTCAGGAGTTGTTGGATTTTCCTGCATTTCATGGATACAAGTTAGATGACGAAATTAAGTATAGGTATGAAATAAAGAAGGATTCATGCGGGGGACAAATATCTCTCAATCAACTTTTAACTGTTTCAAGTGAGAACTTCAGTGATAGGCCAAAAAAGGCTTCTGTAAAATCTAAATTGGAATAA 1500 0.396 MALAALPLFSNPPCRCSSSHSRQPSTFSSHLQTQPFISPLTKSQPPNNNYLLFQFRPSINCRSSSHTPNLDFQYVRLVTLFQEIGISFEETNLLLSNASELTSIQLDLLRYHILSLKSLGLGRMSINHIVTKQLNMLTSNEIDPLLNFLRNELQGQVEEAKVKHLLSANQPKELSNFPQKVQLLIDSGIGVDKIAHVLNKVSLSKAICHKSMEEIERVISFLKPFGGVDLILKHPVLLNHDLDNKLKPRFRVLTELSGGDEDSVGKVVNMFPSIMHLRTERLEEQIEFLRSFAELDDQQIFRIVLVYPSIFNSNRERKLRPRLQFLKDCGLDSGDIFKFLIKEPTFLGISFRNNLECKLLFLVKIGYEYRTKELAMAIAASTRTSCGNMQKAVSLFLNYGLSPEDIFAMSKKRPATLQYNPASLEKKIKYLTEEMDRDIQELLDFPAFHGYKLDDEIKYRYEIKKDSCGGQISLNQLLTVSSENFSDRPKKASVKSKLE 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00380 499 Pfam mTERF 296 390 IPR003690 GO:0003690|GO:0006355
Vivi3g00380 499 Pfam mTERF 323 485 IPR003690 GO:0003690|GO:0006355
Vivi3g00380 499 Pfam mTERF 116 364 IPR003690 GO:0003690|GO:0006355
Vivi3g00380 499 Gene3D Transcription termination factor 3, mitochondrial 69 258 IPR038538 -
Vivi3g00380 499 Gene3D Transcription termination factor 3, mitochondrial 259 496 IPR038538 -
Vivi3g00380 499 PANTHER CGI-12 PROTEIN-RELATED 68 257 IPR003690 GO:0003690|GO:0006355
Vivi3g00380 499 SMART mt_12 439 471 IPR003690 GO:0003690|GO:0006355
Vivi3g00380 499 SMART mt_12 337 368 IPR003690 GO:0003690|GO:0006355
Vivi3g00380 499 SMART mt_12 301 332 IPR003690 GO:0003690|GO:0006355
Vivi3g00380 499 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Vivi3g00380 499 SMART mt_12 407 438 IPR003690 GO:0003690|GO:0006355
Vivi3g00380 499 SMART mt_12 228 259 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00380 Vivi-Chr3 6710165 6714800 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi3g00380 mTERF 6.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00380 - - vvo:131626180 624.394