Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00376 ATGGAAGAATCTCACAGAAATCCTCCATCAATGCCACCACTTTCCACCACATCGCCACCGCCAAAAAAGAAGCGAAACCTCCCTGGAATGCCAGATCCAGATGCTGAAGTAATCGCTTTATCTCCGAACACTTTATTAGCAACAAATCGTTTCGTTTGCGAGATCTGCAACAAAGGATTCCAACGCGAACAGAATCTGCAACTTCACCGGCGAGGCCATAACATGCCGTGGAAGCTCCGGCAGCGAGGGAGTAACGAAAATCGCAAGAAAGTGTATGTTTGTCCTGAACCTTCCTGTGTTCATCACAATCCGGCAAGAGCGTTAGGTGACCTCACCGGCGTGAAAAAGCACTTTAGTAGAAAGCACGGCGAGAAGAAGTGGAAATGTGAACGTTGTTCGAAGAATTACGCTGTGAAATGTGATTGGAAAGCGCATATGAAGTGTTGTGGAAGTAGAGAGTATAAATGCGATTGCGGCACTTTGTTCTCTAGGAGAGATAGTTTCATTACGCACAGAGCGTTCTGTGATGTTGTGGCGGCGGATGAGAGTGGCAAAGGAGGTGGCAATGTTGTTGACGCGGTGGTTTCTTCTCCGGCGACGGCTCCGGTGACTCCGTCAACGATATCTGCGGTGTCTCCGGCTTTGTCGTCTATTCAGAGCTCAGATATTGCAGAAAACACAACAAGGCTGTCACCACCACCCTCTTCAAATGCTATCACTTCCACTTCTACTAGCTGTTACTCCTCATTCAGCACTCTCATGTCAAGTTTGACTCACTCAGATTGCCCTGCAGCTTTCTCTGTCAATGAACCCACCACCCTCTCACTTTTCACACCACTCTATCTCTCCAACAACCATGATTACCCTGTTTCCCACTACAGCAATGCATCTCCACAACCTGCACTATCTGCCACTGCATTACTCCATAAAGCTGCTCAAGTGGGTTCATCTTCATCTAATGCATCCTTGCTTCGTGCTTTAGGGTTGAAAGAAAACACTGTCAGTAGTATTAACAGTACCACAACAGTACAATGGAAGAATGGTCATGATCATGTAAAGCAAGAGAATGAGCCTGTGGCAGATTACCTTGGGCTTGGACTTCCCTGTGGGAATGAAATGATAGGCTCAACAGGCCAGCCCATGACCCGTGATCTTCTTGGTTTAAGCATGGGATTGGGTAGAGGAGATGATATTTCTGCATTGCTCACATCTTTTGGAGGGAACTTTGATTCATCCACAAATAGATGA 1248 0.4679 MEESHRNPPSMPPLSTTSPPPKKKRNLPGMPDPDAEVIALSPNTLLATNRFVCEICNKGFQREQNLQLHRRGHNMPWKLRQRGSNENRKKVYVCPEPSCVHHNPARALGDLTGVKKHFSRKHGEKKWKCERCSKNYAVKCDWKAHMKCCGSREYKCDCGTLFSRRDSFITHRAFCDVVAADESGKGGGNVVDAVVSSPATAPVTPSTISAVSPALSSIQSSDIAENTTRLSPPPSSNAITSTSTSCYSSFSTLMSSLTHSDCPAAFSVNEPTTLSLFTPLYLSNNHDYPVSHYSNASPQPALSATALLHKAAQVGSSSSNASLLRALGLKENTVSSINSTTTVQWKNGHDHVKQENEPVADYLGLGLPCGNEMIGSTGQPMTRDLLGLSMGLGRGDDISALLTSFGGNFDSSTNR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00376 415 SUPERFAMILY beta-beta-alpha zinc fingers 50 147 IPR036236 -
Vivi3g00376 415 Gene3D Classic Zinc Finger 105 182 - -
Vivi3g00376 415 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Vivi3g00376 415 Gene3D Classic Zinc Finger 51 93 - -
Vivi3g00376 415 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 73 IPR013087 -
Vivi3g00376 415 FunFam protein indeterminate-domain 12-like 30 98 - -
Vivi3g00376 415 Pfam Zinc-finger double-stranded RNA-binding 51 73 IPR022755 -
Vivi3g00376 415 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 389 IPR031140 -
Vivi3g00376 415 MobiDBLite consensus disorder prediction 1 34 - -
Vivi3g00376 415 SMART c2h2final6 51 73 IPR013087 -
Vivi3g00376 415 SMART c2h2final6 92 122 IPR013087 -
Vivi3g00376 415 SMART c2h2final6 127 147 IPR013087 -
Vivi3g00376 415 FunFam protein indeterminate-domain 5, chloroplastic-like 105 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00376 Vivi-Chr3 6633742 6636673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00376 22 409 IDZ Gene Family AT3G50700 46.991 8.35e-115 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi3g00376 zf-C2H2_jaz 4.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00376 K25869 - psat:127082208 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00376 3 6633742 6636673 Vivi3g00376 3 6633742 6636673 ECH