Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00357 ATGATCATAAAACACACACTCCTAATCCTTTCATTATCCCTAATCTTTCTCCCAATAATTAATTCTCAAGTTAATTACCATTACTGCAACCGAACATGTGGTTCATCAAAACCCTCCCCTTACCCGTTCGGATTCTCTTCTGGTTGCGAAATTCGCCTCAACTGCACCGTCGACGGTGAAATCTTCATCGGTGAATTCCCAATCCAATCGTTAACCTCGAATAGCATAATAGTAAACATCAAAGCACAATGTAATCGTCCGTTTGAGAGGCTCCACCAGCTCTTCAGCCACAAATACGCACCTACTTCCGGAAACGTGATTCTGTTACAGAACTGTACGGAGAATCTCCTGCCTTGTTCTATACCGGAGACTCTGCTTCCGAATCGATTCGAATCGGAATCTAACGGTTGTGGTAACATCTCCGGTAGCGGAGGCGGAAAATTGAGTTGTTATTTTGAGAATAATACGAGGCGTTTTGTGGATGAGAAGAGGTTGGAGCGAATCGGATGTGAGTTCTTTATGTCTTCTATATCGACGGAGAATTTGAGGAAGAATTTGGATTCGGCGGTTTCTTTGGAAGTGGCTACGATTGAACTTGGATGGTGGCTTCACGGAGATCGGTGTCTTTGTTCTGATCATGCGAACTGTACTAAAATTGAGTCGCCGATTGATGGAAAGCTAGGGTTTCGGTGTGGTTGTAAGGAAGGGTTTGTCGGCGATGGGTTTTTGGCCGGAAATGGCTGCCGGAAAGCCTCCTCATCAACCTGCAATCCAACAAAGTACATGTCTGGAAGCTGTGGAGGAACAGCTAGGTTCATTGTCTTAATTGGAGGGTTTGTTTTCGGTGTTTCAATGATGATTACTCTGGGTTCAGTATGTTGTTACTTTCGCCGACGCACCAAATTGAGAATCACAAAGAGCACAAAAAGACGCTTCACCGAAACTACTAACAATTACAGCATTCCTATCTATCCCTACAAAGACATTGAAAAAGCTACAAATAGTTTCTCAGAGAAACAAAGGTTGGGAACCGGTGCATATGGTACAGTTTATTCTGGAAAACTTTACAATGATGAATATGTTGCCATCAAAAGAATCAAACATAGAGATAATGAAAGCATTGAACAAGTCATGAATGAGATCAAGCTAATTTCCTCTGTTAGTCATCCCAATTTAGTGCACTTGTTGGGATGTTCCATTGAATATGGAGAACAAATCTTGGTGTATGAGTTCATGCCTAATGGAACACTGAGTCAACATTTACAAAGAGAGAGAGGGAATGGGCTTTCATGGCCTGTTAGACTCAAAATTGCAACAGAAACAGCACAAGCCATAGCACATCTTCATTCAGCAATTAGTCCACCTATTTACCACAGAGATATCAAGTCAAGTAACATTCTTTTGGACCGCAATTTCGGATCCAAAGTAGCAGATTTTGGGCTTTCTAGACTAGGAATAACAGAAATATCCCATGTTTCTCACGTTTCAACTGCACCACAAGGAACCCCTGGCTACGTCGATCCACAATATCATCAAGACTTTCACCTTTCCGATAAAAGCGATGTATATAGCTTTGGTGTTGTTCTTCTTGAGATCATAACAGGACTAAAAGCAGTTGACTTCTCTCGTCCTCATAATGAAGTTAACTTGGCTTGTCTTGCTGTTGACAGGATCAGAAAAGGGCTATTAGTTGATATTATTGACCCAGTAATATTTCTTGAGCCCCAAGCAAGCCATGATGGGTGGACACTTTCCTCCATACACAAGGTAGCTGAGGTGGCATTTAGATGTCTTGCATTTCACAGGGATATGAGACCTTGTATGACAGAAGTAGCAACTGAGTTAGAGCAACTAAGGTTGACTGACAGGACCTCTTTTGAAGAAAACAACTCTATTATAGGTTCAATAGATCACATATCATCATGCTCTTCTTCTAGCGAAAGTGAGAAACCTTTGAGTACCACTACATTGAAGAATGCCGGATCTAAAGATAAAGGCCATCTTAAGCTCGAGACTAAGCCCGTTTCTTTTAAGTCAGTTGATAGGCTCAATAGTAGCTCACCGGTTTCGGTTCAAGACCCAGACCCATGGTTTAGTGAGCAGAGTTCTCCTTCGTCAAGCAGTTTCCCCAGCAAGTCATTTGATCATGGATCAGACTCATATGGTCAACAAACTAGTTTGTAG 2184 0.4194 MIIKHTLLILSLSLIFLPIINSQVNYHYCNRTCGSSKPSPYPFGFSSGCEIRLNCTVDGEIFIGEFPIQSLTSNSIIVNIKAQCNRPFERLHQLFSHKYAPTSGNVILLQNCTENLLPCSIPETLLPNRFESESNGCGNISGSGGGKLSCYFENNTRRFVDEKRLERIGCEFFMSSISTENLRKNLDSAVSLEVATIELGWWLHGDRCLCSDHANCTKIESPIDGKLGFRCGCKEGFVGDGFLAGNGCRKASSSTCNPTKYMSGSCGGTARFIVLIGGFVFGVSMMITLGSVCCYFRRRTKLRITKSTKRRFTETTNNYSIPIYPYKDIEKATNSFSEKQRLGTGAYGTVYSGKLYNDEYVAIKRIKHRDNESIEQVMNEIKLISSVSHPNLVHLLGCSIEYGEQILVYEFMPNGTLSQHLQRERGNGLSWPVRLKIATETAQAIAHLHSAISPPIYHRDIKSSNILLDRNFGSKVADFGLSRLGITEISHVSHVSTAPQGTPGYVDPQYHQDFHLSDKSDVYSFGVVLLEIITGLKAVDFSRPHNEVNLACLAVDRIRKGLLVDIIDPVIFLEPQASHDGWTLSSIHKVAEVAFRCLAFHRDMRPCMTEVATELEQLRLTDRTSFEENNSIIGSIDHISSCSSSSESEKPLSTTTLKNAGSKDKGHLKLETKPVSFKSVDRLNSSSPVSVQDPDPWFSEQSSPSSSSFPSKSFDHGSDSYGQQTSL 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00357 727 Pfam Protein tyrosine and serine/threonine kinase 339 535 IPR001245 GO:0004672|GO:0006468
Vivi3g00357 727 Gene3D Transferase(Phosphotransferase) domain 1 412 645 - -
Vivi3g00357 727 ProSiteProfiles Protein kinase domain profile. 336 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00357 727 MobiDBLite consensus disorder prediction 640 661 - -
Vivi3g00357 727 FunFam Wall-associated receptor kinase-like 14 303 411 - -
Vivi3g00357 727 SMART serkin_6 336 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00357 727 Gene3D Laminin 209 243 - -
Vivi3g00357 727 Gene3D Phosphorylase Kinase; domain 1 297 411 - -
Vivi3g00357 727 MobiDBLite consensus disorder prediction 662 676 - -
Vivi3g00357 727 FunFam Wall-associated receptor kinase-like 20 412 628 - -
Vivi3g00357 727 MobiDBLite consensus disorder prediction 678 727 - -
Vivi3g00357 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Vivi3g00357 727 SUPERFAMILY Protein kinase-like (PK-like) 311 616 IPR011009 -
Vivi3g00357 727 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 8 696 IPR044652 GO:0004672
Vivi3g00357 727 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Vivi3g00357 727 MobiDBLite consensus disorder prediction 640 727 - -
Vivi3g00357 727 FunFam Wall-associated receptor kinase-like 14 isoform A 208 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00357 Vivi-Chr3 6323220 6328442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00357 1 709 Receptor kinase-like Gene Family AT2G23450 49.516 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi3g00357 PK_Tyr_Ser-Thr 6.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00357 - - tpra:123893607 1154.04